Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2873 and GFF2874 are separated by 100 nucleotides GFF2874 and GFF2875 are separated by 29 nucleotides
GFF2873 - hypothetical protein, at 590,365 to 591,282
GFF2873
GFF2874 - Hydrogen peroxide-inducible genes activator, at 591,383 to 592,318
GFF2874
GFF2875 - Muconate cycloisomerase 1, at 592,348 to 593,514
GFF2875
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 590.406 kb on - strand at 590.471 kb on + strand, within GFF2873 at 590.471 kb on + strand, within GFF2873 at 590.639 kb on + strand, within GFF2873 at 590.639 kb on + strand, within GFF2873 at 590.639 kb on + strand, within GFF2873 at 590.639 kb on + strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.640 kb on - strand, within GFF2873 at 590.717 kb on + strand, within GFF2873 at 590.717 kb on + strand, within GFF2873 at 590.718 kb on - strand, within GFF2873 at 590.718 kb on - strand, within GFF2873 at 590.718 kb on - strand, within GFF2873 at 590.718 kb on - strand, within GFF2873 at 590.861 kb on + strand, within GFF2873 at 590.861 kb on + strand, within GFF2873 at 590.861 kb on + strand, within GFF2873 at 590.861 kb on + strand, within GFF2873 at 590.984 kb on + strand, within GFF2873 at 590.984 kb on + strand, within GFF2873 at 590.984 kb on + strand, within GFF2873 at 590.984 kb on + strand, within GFF2873 at 590.985 kb on - strand, within GFF2873 at 591.044 kb on + strand, within GFF2873 at 591.044 kb on + strand, within GFF2873 at 591.334 kb on + strand at 591.357 kb on + strand at 591.460 kb on + strand at 591.460 kb on + strand at 591.460 kb on + strand at 591.461 kb on - strand at 591.461 kb on - strand at 591.549 kb on - strand, within GFF2874 at 591.568 kb on + strand, within GFF2874 at 591.755 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.788 kb on + strand, within GFF2874 at 591.789 kb on - strand, within GFF2874 at 591.789 kb on - strand, within GFF2874 at 592.128 kb on - strand, within GFF2874 at 592.128 kb on - strand, within GFF2874 at 592.371 kb on - strand at 592.481 kb on + strand, within GFF2875 at 592.481 kb on + strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.482 kb on - strand, within GFF2875 at 592.814 kb on + strand, within GFF2875 at 593.172 kb on + strand, within GFF2875 at 593.173 kb on - strand, within GFF2875 at 593.180 kb on + strand, within GFF2875 at 593.251 kb on + strand, within GFF2875 at 593.251 kb on + strand, within GFF2875 at 593.252 kb on - strand, within GFF2875 at 593.252 kb on - strand, within GFF2875
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 590,406 - +0.1 590,471 + GFF2873 0.12 -0.8 590,471 + GFF2873 0.12 -1.1 590,639 + GFF2873 0.30 -1.9 590,639 + GFF2873 0.30 +0.0 590,639 + GFF2873 0.30 -1.0 590,639 + GFF2873 0.30 +0.3 590,640 - GFF2873 0.30 -0.2 590,640 - GFF2873 0.30 +0.7 590,640 - GFF2873 0.30 +0.4 590,640 - GFF2873 0.30 -0.2 590,640 - GFF2873 0.30 -0.5 590,640 - GFF2873 0.30 +0.1 590,717 + GFF2873 0.38 -0.2 590,717 + GFF2873 0.38 -0.5 590,718 - GFF2873 0.38 -0.2 590,718 - GFF2873 0.38 +0.2 590,718 - GFF2873 0.38 -0.3 590,718 - GFF2873 0.38 +0.6 590,861 + GFF2873 0.54 -3.2 590,861 + GFF2873 0.54 +0.8 590,861 + GFF2873 0.54 +0.2 590,861 + GFF2873 0.54 +0.1 590,984 + GFF2873 0.67 +0.5 590,984 + GFF2873 0.67 +0.5 590,984 + GFF2873 0.67 +0.4 590,984 + GFF2873 0.67 -0.7 590,985 - GFF2873 0.68 -0.0 591,044 + GFF2873 0.74 +0.5 591,044 + GFF2873 0.74 -1.1 591,334 + -0.8 591,357 + +0.1 591,460 + -0.0 591,460 + +0.5 591,460 + -0.9 591,461 - -1.1 591,461 - +0.1 591,549 - GFF2874 0.18 -0.9 591,568 + GFF2874 0.20 -0.3 591,755 + GFF2874 0.40 -0.9 591,788 + GFF2874 0.43 -1.3 591,788 + GFF2874 0.43 -0.5 591,788 + GFF2874 0.43 -0.3 591,789 - GFF2874 0.43 +0.7 591,789 - GFF2874 0.43 -0.6 592,128 - GFF2874 0.80 +0.5 592,128 - GFF2874 0.80 +0.0 592,371 - -0.5 592,481 + GFF2875 0.11 -0.7 592,481 + GFF2875 0.11 +0.3 592,482 - GFF2875 0.11 -0.1 592,482 - GFF2875 0.11 -0.7 592,482 - GFF2875 0.11 +0.0 592,482 - GFF2875 0.11 -1.0 592,814 + GFF2875 0.40 +0.2 593,172 + GFF2875 0.71 -0.6 593,173 - GFF2875 0.71 -0.4 593,180 + GFF2875 0.71 +0.5 593,251 + GFF2875 0.77 +1.6 593,251 + GFF2875 0.77 +0.6 593,252 - GFF2875 0.77 +0.2 593,252 - GFF2875 0.77 -0.0
Or see this region's nucleotide sequence