Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2861 and GFF2862 are separated by 102 nucleotides GFF2862 and GFF2863 are separated by 163 nucleotides
GFF2861 - 2-halobenzoate 1,2-dioxygenase large subunit, at 575,648 to 577,006
GFF2861
GFF2862 - Muconate cycloisomerase 1, at 577,109 to 578,293
GFF2862
GFF2863 - HTH-type transcriptional regulator BenM, at 578,457 to 579,398
GFF2863
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2 at 576.162 kb on + strand, within GFF2861 at 576.162 kb on + strand, within GFF2861 at 576.162 kb on + strand, within GFF2861 at 576.163 kb on - strand, within GFF2861 at 576.229 kb on - strand, within GFF2861 at 576.312 kb on + strand, within GFF2861 at 576.313 kb on - strand, within GFF2861 at 576.313 kb on - strand, within GFF2861 at 576.339 kb on + strand, within GFF2861 at 576.340 kb on - strand, within GFF2861 at 576.340 kb on - strand, within GFF2861 at 576.385 kb on - strand, within GFF2861 at 576.390 kb on + strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.528 kb on + strand, within GFF2861 at 576.528 kb on + strand, within GFF2861 at 576.591 kb on + strand, within GFF2861 at 576.591 kb on + strand, within GFF2861 at 576.730 kb on - strand, within GFF2861 at 576.802 kb on - strand, within GFF2861 at 576.805 kb on - strand, within GFF2861 at 576.805 kb on - strand, within GFF2861 at 576.843 kb on + strand, within GFF2861 at 576.844 kb on - strand, within GFF2861 at 577.010 kb on + strand at 577.099 kb on + strand at 577.100 kb on - strand at 577.111 kb on - strand at 577.227 kb on + strand at 577.227 kb on + strand at 577.368 kb on + strand, within GFF2862 at 577.626 kb on + strand, within GFF2862 at 577.626 kb on + strand, within GFF2862 at 577.627 kb on - strand, within GFF2862 at 577.627 kb on - strand, within GFF2862 at 578.034 kb on + strand, within GFF2862 at 578.034 kb on + strand, within GFF2862 at 578.035 kb on - strand, within GFF2862 at 578.035 kb on - strand, within GFF2862 at 578.038 kb on + strand, within GFF2862 at 578.039 kb on - strand, within GFF2862 at 578.478 kb on + strand at 578.478 kb on + strand at 578.478 kb on + strand at 578.650 kb on - strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.763 kb on + strand, within GFF2863 at 578.764 kb on - strand, within GFF2863 at 578.764 kb on - strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.923 kb on + strand, within GFF2863 at 578.924 kb on - strand, within GFF2863 at 578.924 kb on - strand, within GFF2863 at 579.039 kb on + strand, within GFF2863 at 579.040 kb on - strand, within GFF2863 at 579.268 kb on - strand, within GFF2863
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 576,162 + GFF2861 0.38 -0.3 576,162 + GFF2861 0.38 +0.3 576,162 + GFF2861 0.38 +0.5 576,163 - GFF2861 0.38 -1.6 576,229 - GFF2861 0.43 +0.5 576,312 + GFF2861 0.49 +0.5 576,313 - GFF2861 0.49 +1.1 576,313 - GFF2861 0.49 -0.5 576,339 + GFF2861 0.51 +0.7 576,340 - GFF2861 0.51 +0.1 576,340 - GFF2861 0.51 -0.3 576,385 - GFF2861 0.54 +0.3 576,390 + GFF2861 0.55 -1.1 576,391 - GFF2861 0.55 -1.3 576,391 - GFF2861 0.55 -0.1 576,391 - GFF2861 0.55 -0.0 576,528 + GFF2861 0.65 -0.0 576,528 + GFF2861 0.65 -0.2 576,591 + GFF2861 0.69 +0.2 576,591 + GFF2861 0.69 -0.7 576,730 - GFF2861 0.80 -1.2 576,802 - GFF2861 0.85 -0.8 576,805 - GFF2861 0.85 -0.2 576,805 - GFF2861 0.85 +0.7 576,843 + GFF2861 0.88 -0.7 576,844 - GFF2861 0.88 +1.3 577,010 + +0.1 577,099 + +1.9 577,100 - +0.4 577,111 - +2.0 577,227 + +0.1 577,227 + +0.0 577,368 + GFF2862 0.22 -0.9 577,626 + GFF2862 0.44 -1.4 577,626 + GFF2862 0.44 -0.7 577,627 - GFF2862 0.44 +0.3 577,627 - GFF2862 0.44 -0.8 578,034 + GFF2862 0.78 -1.8 578,034 + GFF2862 0.78 +0.8 578,035 - GFF2862 0.78 +0.5 578,035 - GFF2862 0.78 -0.6 578,038 + GFF2862 0.78 -0.3 578,039 - GFF2862 0.78 +0.5 578,478 + -0.2 578,478 + +0.0 578,478 + +0.1 578,650 - GFF2863 0.20 +0.5 578,763 + GFF2863 0.32 -0.5 578,763 + GFF2863 0.32 -0.8 578,763 + GFF2863 0.32 -0.4 578,764 - GFF2863 0.33 -1.5 578,764 - GFF2863 0.33 -0.7 578,923 + GFF2863 0.49 -0.2 578,923 + GFF2863 0.49 -0.3 578,923 + GFF2863 0.49 -1.3 578,924 - GFF2863 0.50 -0.4 578,924 - GFF2863 0.50 +0.2 579,039 + GFF2863 0.62 +0.1 579,040 - GFF2863 0.62 -0.6 579,268 - GFF2863 0.86 -0.3
Or see this region's nucleotide sequence