Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2859 and GFF2860 are separated by 32 nucleotides GFF2860 and GFF2861 overlap by 4 nucleotides GFF2861 and GFF2862 are separated by 102 nucleotides
GFF2859 - Benzoate 1,2-dioxygenase electron transfer component, at 574,108 to 575,130
GFF2859
GFF2860 - 2-halobenzoate 1,2-dioxygenase small subunit, at 575,163 to 575,651
GFF2860
GFF2861 - 2-halobenzoate 1,2-dioxygenase large subunit, at 575,648 to 577,006
GFF2861
GFF2862 - Muconate cycloisomerase 1, at 577,109 to 578,293
GFF2862
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -1
0
1
2 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.701 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.938 kb on + strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.941 kb on - strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.118 kb on + strand at 575.119 kb on - strand at 575.119 kb on - strand at 575.173 kb on + strand at 575.174 kb on - strand at 575.299 kb on + strand, within GFF2860 at 575.299 kb on + strand, within GFF2860 at 575.300 kb on - strand, within GFF2860 at 575.326 kb on + strand, within GFF2860 at 575.470 kb on + strand, within GFF2860 at 575.470 kb on + strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.471 kb on - strand, within GFF2860 at 575.473 kb on + strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.474 kb on - strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.542 kb on + strand, within GFF2860 at 575.543 kb on - strand, within GFF2860 at 575.560 kb on + strand, within GFF2860 at 575.560 kb on + strand, within GFF2860 at 575.561 kb on - strand, within GFF2860 at 575.615 kb on - strand at 575.706 kb on + strand at 575.706 kb on + strand at 575.706 kb on + strand at 575.707 kb on - strand at 575.707 kb on - strand at 575.859 kb on + strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.860 kb on - strand, within GFF2861 at 575.934 kb on + strand, within GFF2861 at 575.935 kb on - strand, within GFF2861 at 575.990 kb on + strand, within GFF2861 at 576.004 kb on - strand, within GFF2861 at 576.078 kb on + strand, within GFF2861 at 576.078 kb on + strand, within GFF2861 at 576.078 kb on + strand, within GFF2861 at 576.162 kb on + strand, within GFF2861 at 576.162 kb on + strand, within GFF2861 at 576.162 kb on + strand, within GFF2861 at 576.163 kb on - strand, within GFF2861 at 576.229 kb on - strand, within GFF2861 at 576.312 kb on + strand, within GFF2861 at 576.313 kb on - strand, within GFF2861 at 576.313 kb on - strand, within GFF2861 at 576.339 kb on + strand, within GFF2861 at 576.340 kb on - strand, within GFF2861 at 576.340 kb on - strand, within GFF2861 at 576.385 kb on - strand, within GFF2861 at 576.390 kb on + strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.391 kb on - strand, within GFF2861 at 576.528 kb on + strand, within GFF2861 at 576.528 kb on + strand, within GFF2861 at 576.591 kb on + strand, within GFF2861 at 576.591 kb on + strand, within GFF2861 at 576.730 kb on - strand, within GFF2861 at 576.802 kb on - strand, within GFF2861 at 576.805 kb on - strand, within GFF2861 at 576.805 kb on - strand, within GFF2861 at 576.843 kb on + strand, within GFF2861 at 576.844 kb on - strand, within GFF2861 at 577.010 kb on + strand at 577.099 kb on + strand at 577.100 kb on - strand at 577.111 kb on - strand at 577.227 kb on + strand at 577.227 kb on + strand at 577.368 kb on + strand, within GFF2862 at 577.626 kb on + strand, within GFF2862 at 577.626 kb on + strand, within GFF2862 at 577.627 kb on - strand, within GFF2862 at 577.627 kb on - strand, within GFF2862
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 574,667 + GFF2859 0.55 +0.2 574,667 + GFF2859 0.55 -0.5 574,667 + GFF2859 0.55 -0.1 574,667 + GFF2859 0.55 +0.1 574,668 - GFF2859 0.55 +0.9 574,668 - GFF2859 0.55 +0.6 574,701 + GFF2859 0.58 +0.2 574,709 + GFF2859 0.59 -0.3 574,709 + GFF2859 0.59 -1.1 574,710 - GFF2859 0.59 -0.8 574,710 - GFF2859 0.59 -0.6 574,710 - GFF2859 0.59 -0.6 574,938 + GFF2859 0.81 +0.0 574,939 - GFF2859 0.81 -0.5 574,939 - GFF2859 0.81 +0.6 574,941 - GFF2859 0.81 +0.5 574,958 + GFF2859 0.83 -0.6 574,958 + GFF2859 0.83 -1.2 574,959 - GFF2859 0.83 -0.7 574,959 - GFF2859 0.83 -0.3 574,959 - GFF2859 0.83 -0.4 574,959 - GFF2859 0.83 -0.3 574,959 - GFF2859 0.83 -0.6 574,959 - GFF2859 0.83 +0.5 574,959 - GFF2859 0.83 +0.1 574,959 - GFF2859 0.83 -0.2 575,118 + +0.3 575,118 + +0.7 575,118 + -1.7 575,118 + +0.5 575,118 + -0.1 575,119 - -0.2 575,119 - -0.5 575,173 + +0.7 575,174 - -0.8 575,299 + GFF2860 0.28 -0.7 575,299 + GFF2860 0.28 +0.3 575,300 - GFF2860 0.28 -0.8 575,326 + GFF2860 0.33 +0.3 575,470 + GFF2860 0.63 +0.1 575,470 + GFF2860 0.63 +0.0 575,471 - GFF2860 0.63 +0.1 575,471 - GFF2860 0.63 -0.9 575,471 - GFF2860 0.63 -0.1 575,473 + GFF2860 0.63 +0.5 575,474 - GFF2860 0.64 +0.2 575,474 - GFF2860 0.64 +0.1 575,474 - GFF2860 0.64 +1.5 575,474 - GFF2860 0.64 +0.0 575,474 - GFF2860 0.64 +0.1 575,474 - GFF2860 0.64 +0.5 575,542 + GFF2860 0.78 -0.5 575,542 + GFF2860 0.78 -0.3 575,542 + GFF2860 0.78 +0.3 575,543 - GFF2860 0.78 -0.9 575,560 + GFF2860 0.81 -0.2 575,560 + GFF2860 0.81 -0.5 575,561 - GFF2860 0.81 +1.0 575,615 - +0.1 575,706 + +0.4 575,706 + -0.0 575,706 + +1.3 575,707 - -0.2 575,707 - -1.0 575,859 + GFF2861 0.16 -1.2 575,860 - GFF2861 0.16 -0.0 575,860 - GFF2861 0.16 +0.7 575,860 - GFF2861 0.16 +0.4 575,934 + GFF2861 0.21 +0.0 575,935 - GFF2861 0.21 -0.0 575,990 + GFF2861 0.25 -0.2 576,004 - GFF2861 0.26 -0.0 576,078 + GFF2861 0.32 +0.9 576,078 + GFF2861 0.32 +0.4 576,078 + GFF2861 0.32 +1.5 576,162 + GFF2861 0.38 -0.3 576,162 + GFF2861 0.38 +0.3 576,162 + GFF2861 0.38 +0.5 576,163 - GFF2861 0.38 -1.6 576,229 - GFF2861 0.43 +0.5 576,312 + GFF2861 0.49 +0.5 576,313 - GFF2861 0.49 +1.1 576,313 - GFF2861 0.49 -0.5 576,339 + GFF2861 0.51 +0.7 576,340 - GFF2861 0.51 +0.1 576,340 - GFF2861 0.51 -0.3 576,385 - GFF2861 0.54 +0.3 576,390 + GFF2861 0.55 -1.1 576,391 - GFF2861 0.55 -1.3 576,391 - GFF2861 0.55 -0.1 576,391 - GFF2861 0.55 -0.0 576,528 + GFF2861 0.65 -0.0 576,528 + GFF2861 0.65 -0.2 576,591 + GFF2861 0.69 +0.2 576,591 + GFF2861 0.69 -0.7 576,730 - GFF2861 0.80 -1.2 576,802 - GFF2861 0.85 -0.8 576,805 - GFF2861 0.85 -0.2 576,805 - GFF2861 0.85 +0.7 576,843 + GFF2861 0.88 -0.7 576,844 - GFF2861 0.88 +1.3 577,010 + +0.1 577,099 + +1.9 577,100 - +0.4 577,111 - +2.0 577,227 + +0.1 577,227 + +0.0 577,368 + GFF2862 0.22 -0.9 577,626 + GFF2862 0.44 -1.4 577,626 + GFF2862 0.44 -0.7 577,627 - GFF2862 0.44 +0.3 577,627 - GFF2862 0.44 -0.8
Or see this region's nucleotide sequence