Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF285 and GFF286 are separated by 125 nucleotides GFF286 and GFF287 are separated by 277 nucleotides GFF287 and GFF288 are separated by 41 nucleotides
GFF285 - Sarcosine oxidase subunit beta, at 301,007 to 302,260
GFF285
GFF286 - HTH-type transcriptional regulator HdfR, at 302,386 to 303,348
GFF286
GFF287 - hypothetical protein, at 303,626 to 303,973
GFF287
GFF288 - Peptidoglycan-associated lipoprotein, at 304,015 to 304,626
GFF288
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1 at 301.416 kb on + strand, within GFF285 at 301.417 kb on - strand, within GFF285 at 301.608 kb on - strand, within GFF285 at 301.692 kb on + strand, within GFF285 at 301.692 kb on + strand, within GFF285 at 301.692 kb on + strand, within GFF285 at 301.692 kb on + strand, within GFF285 at 301.692 kb on + strand, within GFF285 at 301.869 kb on + strand, within GFF285 at 301.870 kb on - strand, within GFF285 at 301.870 kb on - strand, within GFF285 at 301.870 kb on - strand, within GFF285 at 301.935 kb on + strand, within GFF285 at 301.936 kb on - strand, within GFF285 at 301.936 kb on - strand, within GFF285 at 301.936 kb on - strand, within GFF285 at 301.983 kb on + strand, within GFF285 at 301.984 kb on - strand, within GFF285 at 301.984 kb on - strand, within GFF285 at 302.011 kb on - strand, within GFF285 at 302.060 kb on - strand, within GFF285 at 302.112 kb on + strand, within GFF285 at 302.113 kb on - strand, within GFF285 at 302.113 kb on - strand, within GFF285 at 302.115 kb on + strand, within GFF285 at 302.115 kb on + strand, within GFF285 at 302.116 kb on - strand, within GFF285 at 302.164 kb on - strand at 302.164 kb on - strand at 302.164 kb on - strand at 302.336 kb on + strand at 302.336 kb on + strand at 302.336 kb on + strand at 302.337 kb on - strand at 302.359 kb on - strand at 302.359 kb on - strand at 302.362 kb on - strand at 302.374 kb on + strand at 302.899 kb on + strand, within GFF286 at 302.899 kb on + strand, within GFF286 at 302.899 kb on + strand, within GFF286 at 302.900 kb on - strand, within GFF286 at 303.175 kb on + strand, within GFF286 at 303.346 kb on + strand at 303.346 kb on + strand at 303.346 kb on + strand at 303.346 kb on + strand at 303.347 kb on - strand at 303.437 kb on + strand at 303.437 kb on + strand at 303.505 kb on + strand at 303.505 kb on + strand at 303.514 kb on + strand at 303.534 kb on + strand at 303.573 kb on + strand at 303.573 kb on + strand at 303.574 kb on - strand at 303.585 kb on + strand at 303.633 kb on - strand at 303.633 kb on - strand at 303.633 kb on - strand at 303.776 kb on + strand, within GFF287 at 303.966 kb on - strand at 304.322 kb on - strand, within GFF288
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 301,416 + GFF285 0.33 +1.1 301,417 - GFF285 0.33 -0.2 301,608 - GFF285 0.48 +0.8 301,692 + GFF285 0.55 -1.3 301,692 + GFF285 0.55 +0.3 301,692 + GFF285 0.55 -0.2 301,692 + GFF285 0.55 +0.6 301,692 + GFF285 0.55 -0.7 301,869 + GFF285 0.69 +0.6 301,870 - GFF285 0.69 +0.1 301,870 - GFF285 0.69 +0.5 301,870 - GFF285 0.69 -0.0 301,935 + GFF285 0.74 -0.0 301,936 - GFF285 0.74 -0.4 301,936 - GFF285 0.74 +0.5 301,936 - GFF285 0.74 +0.1 301,983 + GFF285 0.78 -0.6 301,984 - GFF285 0.78 -0.6 301,984 - GFF285 0.78 +0.8 302,011 - GFF285 0.80 +0.1 302,060 - GFF285 0.84 +0.2 302,112 + GFF285 0.88 -0.3 302,113 - GFF285 0.88 -0.8 302,113 - GFF285 0.88 -0.5 302,115 + GFF285 0.88 -0.9 302,115 + GFF285 0.88 -0.1 302,116 - GFF285 0.88 +0.3 302,164 - -0.5 302,164 - -0.4 302,164 - +0.9 302,336 + -0.8 302,336 + -0.7 302,336 + -0.2 302,337 - -0.7 302,359 - +0.1 302,359 - +0.8 302,362 - +0.9 302,374 + +0.2 302,899 + GFF286 0.53 +0.8 302,899 + GFF286 0.53 -1.3 302,899 + GFF286 0.53 -0.6 302,900 - GFF286 0.53 -0.2 303,175 + GFF286 0.82 -1.0 303,346 + +0.5 303,346 + +0.5 303,346 + -0.0 303,346 + +0.6 303,347 - -0.0 303,437 + -0.6 303,437 + -1.0 303,505 + -0.3 303,505 + -0.1 303,514 + -0.6 303,534 + +0.8 303,573 + -0.1 303,573 + -0.2 303,574 - +0.8 303,585 + -0.8 303,633 - +0.6 303,633 - -0.4 303,633 - -0.2 303,776 + GFF287 0.43 -0.4 303,966 - -0.5 304,322 - GFF288 0.50 +0.5
Or see this region's nucleotide sequence