Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2857 and GFF2858 are separated by 106 nucleotides GFF2858 and GFF2859 are separated by 54 nucleotides
GFF2857 - Catechol 1,2-dioxygenase 1, at 571,683 to 572,612
GFF2857
GFF2858 - 4-hydroxybenzoate transporter PcaK, at 572,719 to 574,053
GFF2858
GFF2859 - Benzoate 1,2-dioxygenase electron transfer component, at 574,108 to 575,130
GFF2859
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.014 kb on + strand, within GFF2857 at 572.015 kb on - strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.045 kb on - strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.365 kb on + strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.431 kb on + strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.494 kb on + strand, within GFF2857 at 572.721 kb on - strand at 572.777 kb on - strand at 572.948 kb on + strand, within GFF2858 at 572.948 kb on + strand, within GFF2858 at 572.948 kb on + strand, within GFF2858 at 572.969 kb on + strand, within GFF2858 at 572.969 kb on + strand, within GFF2858 at 573.220 kb on + strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.221 kb on - strand, within GFF2858 at 573.248 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.556 kb on + strand, within GFF2858 at 573.557 kb on - strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.644 kb on + strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.645 kb on - strand, within GFF2858 at 573.646 kb on + strand, within GFF2858 at 573.926 kb on - strand at 573.951 kb on - strand at 573.951 kb on - strand at 574.089 kb on + strand at 574.110 kb on - strand at 574.151 kb on + strand at 574.232 kb on + strand, within GFF2859 at 574.232 kb on + strand, within GFF2859 at 574.356 kb on + strand, within GFF2859 at 574.357 kb on - strand, within GFF2859 at 574.359 kb on - strand, within GFF2859 at 574.530 kb on - strand, within GFF2859 at 574.530 kb on - strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.667 kb on + strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.668 kb on - strand, within GFF2859 at 574.701 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.709 kb on + strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.710 kb on - strand, within GFF2859 at 574.938 kb on + strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.939 kb on - strand, within GFF2859 at 574.941 kb on - strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.958 kb on + strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859 at 574.959 kb on - strand, within GFF2859
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 572,014 + GFF2857 0.36 +1.9 572,015 - GFF2857 0.36 -1.0 572,044 + GFF2857 0.39 -1.6 572,044 + GFF2857 0.39 -0.6 572,044 + GFF2857 0.39 +0.7 572,045 - GFF2857 0.39 -0.5 572,122 + GFF2857 0.47 +0.1 572,122 + GFF2857 0.47 -0.3 572,284 + GFF2857 0.65 -0.5 572,284 + GFF2857 0.65 -1.4 572,365 + GFF2857 0.73 -0.8 572,366 - GFF2857 0.73 +0.2 572,366 - GFF2857 0.73 -1.0 572,366 - GFF2857 0.73 -0.3 572,366 - GFF2857 0.73 -0.0 572,366 - GFF2857 0.73 -0.3 572,366 - GFF2857 0.73 -1.2 572,431 + GFF2857 0.80 +0.0 572,432 - GFF2857 0.81 +0.4 572,432 - GFF2857 0.81 -1.0 572,494 + GFF2857 0.87 -0.5 572,721 - -0.5 572,777 - -0.3 572,948 + GFF2858 0.17 -0.6 572,948 + GFF2858 0.17 +0.3 572,948 + GFF2858 0.17 -0.2 572,969 + GFF2858 0.19 +0.2 572,969 + GFF2858 0.19 +0.4 573,220 + GFF2858 0.38 -0.5 573,221 - GFF2858 0.38 -0.4 573,221 - GFF2858 0.38 -1.0 573,221 - GFF2858 0.38 +0.7 573,248 + GFF2858 0.40 -0.4 573,556 + GFF2858 0.63 -0.0 573,556 + GFF2858 0.63 +0.1 573,556 + GFF2858 0.63 -0.9 573,557 - GFF2858 0.63 +0.4 573,644 + GFF2858 0.69 +0.4 573,644 + GFF2858 0.69 -0.1 573,644 + GFF2858 0.69 +0.1 573,645 - GFF2858 0.69 -0.0 573,645 - GFF2858 0.69 -0.5 573,645 - GFF2858 0.69 +0.0 573,646 + GFF2858 0.69 -0.7 573,926 - +0.1 573,951 - -0.6 573,951 - +0.8 574,089 + +1.4 574,110 - +0.9 574,151 + -0.8 574,232 + GFF2859 0.12 +0.1 574,232 + GFF2859 0.12 -0.7 574,356 + GFF2859 0.24 -0.2 574,357 - GFF2859 0.24 -0.3 574,359 - GFF2859 0.25 -0.5 574,530 - GFF2859 0.41 +0.2 574,530 - GFF2859 0.41 +0.3 574,667 + GFF2859 0.55 +0.2 574,667 + GFF2859 0.55 -0.5 574,667 + GFF2859 0.55 -0.1 574,667 + GFF2859 0.55 +0.1 574,668 - GFF2859 0.55 +0.9 574,668 - GFF2859 0.55 +0.6 574,701 + GFF2859 0.58 +0.2 574,709 + GFF2859 0.59 -0.3 574,709 + GFF2859 0.59 -1.1 574,710 - GFF2859 0.59 -0.8 574,710 - GFF2859 0.59 -0.6 574,710 - GFF2859 0.59 -0.6 574,938 + GFF2859 0.81 +0.0 574,939 - GFF2859 0.81 -0.5 574,939 - GFF2859 0.81 +0.6 574,941 - GFF2859 0.81 +0.5 574,958 + GFF2859 0.83 -0.6 574,958 + GFF2859 0.83 -1.2 574,959 - GFF2859 0.83 -0.7 574,959 - GFF2859 0.83 -0.3 574,959 - GFF2859 0.83 -0.4 574,959 - GFF2859 0.83 -0.3 574,959 - GFF2859 0.83 -0.6 574,959 - GFF2859 0.83 +0.5 574,959 - GFF2859 0.83 +0.1 574,959 - GFF2859 0.83 -0.2
Or see this region's nucleotide sequence