Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2855 and GFF2856 overlap by 4 nucleotides GFF2856 and GFF2857 are separated by 55 nucleotides
GFF2855 - hypothetical protein, at 568,734 to 570,353
GFF2855
GFF2856 - hypothetical protein, at 570,350 to 571,627
GFF2856
GFF2857 - Catechol 1,2-dioxygenase 1, at 571,683 to 572,612
GFF2857
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.377 kb on + strand, within GFF2855 at 569.377 kb on + strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.435 kb on + strand, within GFF2855 at 569.484 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.991 kb on + strand, within GFF2855 at 570.177 kb on - strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.465 kb on + strand at 570.465 kb on + strand at 570.466 kb on - strand at 570.466 kb on - strand at 570.466 kb on - strand at 570.669 kb on + strand, within GFF2856 at 570.717 kb on + strand, within GFF2856 at 570.718 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 571.217 kb on - strand, within GFF2856 at 571.473 kb on + strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 571.474 kb on - strand, within GFF2856 at 572.014 kb on + strand, within GFF2857 at 572.015 kb on - strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.044 kb on + strand, within GFF2857 at 572.045 kb on - strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.122 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.284 kb on + strand, within GFF2857 at 572.365 kb on + strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.366 kb on - strand, within GFF2857 at 572.431 kb on + strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.432 kb on - strand, within GFF2857 at 572.494 kb on + strand, within GFF2857
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 569,377 + GFF2855 0.40 -1.2 569,377 + GFF2855 0.40 -0.3 569,378 - GFF2855 0.40 +0.7 569,378 - GFF2855 0.40 +0.8 569,378 - GFF2855 0.40 -0.3 569,435 + GFF2855 0.43 -0.8 569,484 + GFF2855 0.46 -0.9 569,602 + GFF2855 0.54 +0.5 569,602 + GFF2855 0.54 -0.6 569,602 + GFF2855 0.54 -0.5 569,991 + GFF2855 0.78 -0.1 570,177 - GFF2855 0.89 +0.1 570,180 + GFF2855 0.89 -0.2 570,180 + GFF2855 0.89 +0.2 570,180 + GFF2855 0.89 +0.5 570,465 + +0.9 570,465 + +0.8 570,466 - -2.2 570,466 - -0.0 570,466 - -0.4 570,669 + GFF2856 0.25 -0.6 570,717 + GFF2856 0.29 +0.8 570,718 - GFF2856 0.29 -1.2 570,801 - GFF2856 0.35 -0.4 570,801 - GFF2856 0.35 -0.2 570,801 - GFF2856 0.35 -0.7 571,217 - GFF2856 0.68 -0.5 571,473 + GFF2856 0.88 +0.7 571,474 - GFF2856 0.88 -0.3 571,474 - GFF2856 0.88 -0.3 571,474 - GFF2856 0.88 -0.6 571,474 - GFF2856 0.88 +1.0 571,474 - GFF2856 0.88 +0.1 572,014 + GFF2857 0.36 +1.9 572,015 - GFF2857 0.36 -1.0 572,044 + GFF2857 0.39 -1.6 572,044 + GFF2857 0.39 -0.6 572,044 + GFF2857 0.39 +0.7 572,045 - GFF2857 0.39 -0.5 572,122 + GFF2857 0.47 +0.1 572,122 + GFF2857 0.47 -0.3 572,284 + GFF2857 0.65 -0.5 572,284 + GFF2857 0.65 -1.4 572,365 + GFF2857 0.73 -0.8 572,366 - GFF2857 0.73 +0.2 572,366 - GFF2857 0.73 -1.0 572,366 - GFF2857 0.73 -0.3 572,366 - GFF2857 0.73 -0.0 572,366 - GFF2857 0.73 -0.3 572,366 - GFF2857 0.73 -1.2 572,431 + GFF2857 0.80 +0.0 572,432 - GFF2857 0.81 +0.4 572,432 - GFF2857 0.81 -1.0 572,494 + GFF2857 0.87 -0.5
Or see this region's nucleotide sequence