Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2854 and GFF2855 are separated by 170 nucleotides GFF2855 and GFF2856 overlap by 4 nucleotides
GFF2854 - Transketolase 1, at 566,524 to 568,563
GFF2854
GFF2855 - hypothetical protein, at 568,734 to 570,353
GFF2855
GFF2856 - hypothetical protein, at 570,350 to 571,627
GFF2856
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 568.259 kb on + strand, within GFF2854 at 568.260 kb on - strand, within GFF2854 at 568.267 kb on + strand, within GFF2854 at 568.283 kb on + strand, within GFF2854 at 568.376 kb on + strand at 568.377 kb on - strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.735 kb on + strand at 568.818 kb on + strand at 568.818 kb on + strand at 569.092 kb on - strand, within GFF2855 at 569.338 kb on + strand, within GFF2855 at 569.339 kb on - strand, within GFF2855 at 569.377 kb on + strand, within GFF2855 at 569.377 kb on + strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.378 kb on - strand, within GFF2855 at 569.435 kb on + strand, within GFF2855 at 569.484 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.602 kb on + strand, within GFF2855 at 569.991 kb on + strand, within GFF2855 at 570.177 kb on - strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.180 kb on + strand, within GFF2855 at 570.465 kb on + strand at 570.465 kb on + strand at 570.466 kb on - strand at 570.466 kb on - strand at 570.466 kb on - strand at 570.669 kb on + strand, within GFF2856 at 570.717 kb on + strand, within GFF2856 at 570.718 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 570.801 kb on - strand, within GFF2856 at 571.217 kb on - strand, within GFF2856
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 568,259 + GFF2854 0.85 +0.2 568,260 - GFF2854 0.85 -0.0 568,267 + GFF2854 0.85 +0.4 568,283 + GFF2854 0.86 +0.6 568,376 + -0.2 568,377 - +0.5 568,735 + +0.1 568,735 + -0.0 568,735 + +0.2 568,735 + -0.4 568,818 + +0.2 568,818 + -0.1 569,092 - GFF2855 0.22 +0.1 569,338 + GFF2855 0.37 +0.8 569,339 - GFF2855 0.37 -2.0 569,377 + GFF2855 0.40 -1.2 569,377 + GFF2855 0.40 -0.3 569,378 - GFF2855 0.40 +0.7 569,378 - GFF2855 0.40 +0.8 569,378 - GFF2855 0.40 -0.3 569,435 + GFF2855 0.43 -0.8 569,484 + GFF2855 0.46 -0.9 569,602 + GFF2855 0.54 +0.5 569,602 + GFF2855 0.54 -0.6 569,602 + GFF2855 0.54 -0.5 569,991 + GFF2855 0.78 -0.1 570,177 - GFF2855 0.89 +0.1 570,180 + GFF2855 0.89 -0.2 570,180 + GFF2855 0.89 +0.2 570,180 + GFF2855 0.89 +0.5 570,465 + +0.9 570,465 + +0.8 570,466 - -2.2 570,466 - -0.0 570,466 - -0.4 570,669 + GFF2856 0.25 -0.6 570,717 + GFF2856 0.29 +0.8 570,718 - GFF2856 0.29 -1.2 570,801 - GFF2856 0.35 -0.4 570,801 - GFF2856 0.35 -0.2 570,801 - GFF2856 0.35 -0.7 571,217 - GFF2856 0.68 -0.5
Or see this region's nucleotide sequence