Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2852 and GFF2853 are separated by 179 nucleotides GFF2853 and GFF2854 are separated by 31 nucleotides
GFF2852 - Sialic acid TRAP transporter permease protein SiaT, at 563,407 to 565,353
GFF2852
GFF2853 - Glycerate dehydrogenase, at 565,533 to 566,492
GFF2853
GFF2854 - Transketolase 1, at 566,524 to 568,563
GFF2854
Position (kb) 565
566
567 Strain fitness (log2 ratio) -1
0
1 at 564.823 kb on + strand, within GFF2852 at 564.823 kb on + strand, within GFF2852 at 564.823 kb on + strand, within GFF2852 at 564.824 kb on - strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 565.080 kb on + strand, within GFF2852 at 565.081 kb on - strand, within GFF2852 at 565.153 kb on + strand, within GFF2852 at 565.154 kb on - strand, within GFF2852 at 565.219 kb on + strand at 565.280 kb on - strand at 565.393 kb on + strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.847 kb on + strand, within GFF2853 at 565.849 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 566.204 kb on - strand, within GFF2853 at 566.281 kb on - strand, within GFF2853 at 566.404 kb on + strand at 566.405 kb on - strand at 566.583 kb on - strand at 566.894 kb on + strand, within GFF2854 at 567.197 kb on + strand, within GFF2854 at 567.197 kb on + strand, within GFF2854 at 567.215 kb on + strand, within GFF2854 at 567.215 kb on + strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.216 kb on - strand, within GFF2854 at 567.306 kb on - strand, within GFF2854 at 567.387 kb on + strand, within GFF2854 at 567.410 kb on + strand, within GFF2854 at 567.456 kb on - strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854 at 567.485 kb on + strand, within GFF2854
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 564,823 + GFF2852 0.73 -0.0 564,823 + GFF2852 0.73 +0.2 564,823 + GFF2852 0.73 +0.4 564,824 - GFF2852 0.73 -1.3 564,920 + GFF2852 0.78 +0.5 564,920 + GFF2852 0.78 -0.2 564,920 + GFF2852 0.78 -0.7 565,080 + GFF2852 0.86 -0.2 565,081 - GFF2852 0.86 +0.3 565,153 + GFF2852 0.90 +0.4 565,154 - GFF2852 0.90 -0.4 565,219 + +0.3 565,280 - -0.0 565,393 + -0.3 565,394 - -0.2 565,394 - -0.9 565,394 - +0.1 565,394 - +0.2 565,405 - +1.1 565,405 - +0.1 565,405 - -0.8 565,405 - +0.1 565,847 + GFF2853 0.33 +0.5 565,849 + GFF2853 0.33 -1.2 565,966 + GFF2853 0.45 -0.8 565,966 + GFF2853 0.45 -1.0 565,966 + GFF2853 0.45 -0.3 566,204 - GFF2853 0.70 -1.4 566,281 - GFF2853 0.78 -0.5 566,404 + +0.2 566,405 - -0.0 566,583 - -0.0 566,894 + GFF2854 0.18 +0.1 567,197 + GFF2854 0.33 +0.6 567,197 + GFF2854 0.33 -0.4 567,215 + GFF2854 0.34 +0.1 567,215 + GFF2854 0.34 +0.4 567,216 - GFF2854 0.34 +1.2 567,216 - GFF2854 0.34 -0.3 567,216 - GFF2854 0.34 +1.3 567,306 - GFF2854 0.38 +0.4 567,387 + GFF2854 0.42 +0.1 567,410 + GFF2854 0.43 -0.0 567,456 - GFF2854 0.46 -0.0 567,485 + GFF2854 0.47 -0.0 567,485 + GFF2854 0.47 +0.4 567,485 + GFF2854 0.47 -0.8 567,485 + GFF2854 0.47 -0.3
Or see this region's nucleotide sequence