Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2851 and GFF2852 are separated by 2 nucleotides GFF2852 and GFF2853 are separated by 179 nucleotides
GFF2851 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 562,379 to 563,404
GFF2851
GFF2852 - Sialic acid TRAP transporter permease protein SiaT, at 563,407 to 565,353
GFF2852
GFF2853 - Glycerate dehydrogenase, at 565,533 to 566,492
GFF2853
Position (kb) 563
564
565
566 Strain fitness (log2 ratio) -1
0
1
2 at 562.487 kb on + strand, within GFF2851 at 562.488 kb on - strand, within GFF2851 at 562.493 kb on + strand, within GFF2851 at 562.494 kb on - strand, within GFF2851 at 562.742 kb on + strand, within GFF2851 at 562.784 kb on + strand, within GFF2851 at 562.785 kb on - strand, within GFF2851 at 562.995 kb on - strand, within GFF2851 at 563.067 kb on - strand, within GFF2851 at 563.067 kb on - strand, within GFF2851 at 563.114 kb on + strand, within GFF2851 at 563.327 kb on + strand at 563.327 kb on + strand at 563.420 kb on + strand at 563.420 kb on + strand at 563.482 kb on + strand at 563.575 kb on + strand at 563.639 kb on - strand, within GFF2852 at 563.860 kb on + strand, within GFF2852 at 563.861 kb on - strand, within GFF2852 at 563.961 kb on + strand, within GFF2852 at 563.961 kb on + strand, within GFF2852 at 564.082 kb on + strand, within GFF2852 at 564.082 kb on + strand, within GFF2852 at 564.083 kb on - strand, within GFF2852 at 564.175 kb on + strand, within GFF2852 at 564.176 kb on - strand, within GFF2852 at 564.176 kb on - strand, within GFF2852 at 564.367 kb on + strand, within GFF2852 at 564.367 kb on + strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.415 kb on - strand, within GFF2852 at 564.823 kb on + strand, within GFF2852 at 564.823 kb on + strand, within GFF2852 at 564.823 kb on + strand, within GFF2852 at 564.824 kb on - strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 564.920 kb on + strand, within GFF2852 at 565.080 kb on + strand, within GFF2852 at 565.081 kb on - strand, within GFF2852 at 565.153 kb on + strand, within GFF2852 at 565.154 kb on - strand, within GFF2852 at 565.219 kb on + strand at 565.280 kb on - strand at 565.393 kb on + strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.394 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.405 kb on - strand at 565.847 kb on + strand, within GFF2853 at 565.849 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 565.966 kb on + strand, within GFF2853 at 566.204 kb on - strand, within GFF2853 at 566.281 kb on - strand, within GFF2853
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 562,487 + GFF2851 0.11 -0.4 562,488 - GFF2851 0.11 -1.1 562,493 + GFF2851 0.11 +0.0 562,494 - GFF2851 0.11 +0.2 562,742 + GFF2851 0.35 +0.2 562,784 + GFF2851 0.39 -1.3 562,785 - GFF2851 0.40 -0.2 562,995 - GFF2851 0.60 -1.7 563,067 - GFF2851 0.67 +0.4 563,067 - GFF2851 0.67 +1.5 563,114 + GFF2851 0.72 -0.6 563,327 + -1.0 563,327 + +0.5 563,420 + +1.0 563,420 + -0.8 563,482 + -0.5 563,575 + -0.0 563,639 - GFF2852 0.12 +0.4 563,860 + GFF2852 0.23 +0.3 563,861 - GFF2852 0.23 +1.1 563,961 + GFF2852 0.28 +0.3 563,961 + GFF2852 0.28 -0.4 564,082 + GFF2852 0.35 +0.6 564,082 + GFF2852 0.35 +0.1 564,083 - GFF2852 0.35 -0.2 564,175 + GFF2852 0.39 -0.2 564,176 - GFF2852 0.39 +0.8 564,176 - GFF2852 0.39 +0.0 564,367 + GFF2852 0.49 +0.1 564,367 + GFF2852 0.49 +0.2 564,368 - GFF2852 0.49 +0.1 564,368 - GFF2852 0.49 +0.4 564,368 - GFF2852 0.49 -0.7 564,388 + GFF2852 0.50 -0.2 564,388 + GFF2852 0.50 -0.3 564,388 + GFF2852 0.50 +0.4 564,389 - GFF2852 0.50 +0.0 564,389 - GFF2852 0.50 -0.3 564,389 - GFF2852 0.50 +0.3 564,389 - GFF2852 0.50 +1.3 564,415 - GFF2852 0.52 +2.2 564,823 + GFF2852 0.73 -0.0 564,823 + GFF2852 0.73 +0.2 564,823 + GFF2852 0.73 +0.4 564,824 - GFF2852 0.73 -1.3 564,920 + GFF2852 0.78 +0.5 564,920 + GFF2852 0.78 -0.2 564,920 + GFF2852 0.78 -0.7 565,080 + GFF2852 0.86 -0.2 565,081 - GFF2852 0.86 +0.3 565,153 + GFF2852 0.90 +0.4 565,154 - GFF2852 0.90 -0.4 565,219 + +0.3 565,280 - -0.0 565,393 + -0.3 565,394 - -0.2 565,394 - -0.9 565,394 - +0.1 565,394 - +0.2 565,405 - +1.1 565,405 - +0.1 565,405 - -0.8 565,405 - +0.1 565,847 + GFF2853 0.33 +0.5 565,849 + GFF2853 0.33 -1.2 565,966 + GFF2853 0.45 -0.8 565,966 + GFF2853 0.45 -1.0 565,966 + GFF2853 0.45 -0.3 566,204 - GFF2853 0.70 -1.4 566,281 - GFF2853 0.78 -0.5
Or see this region's nucleotide sequence