Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2832 and GFF2833 overlap by 4 nucleotides GFF2833 and GFF2834 overlap by 17 nucleotides GFF2834 and GFF2835 are separated by 52 nucleotides
GFF2832 - Nitrobenzene nitroreductase, at 541,357 to 542,076
GFF2832
GFF2833 - HTH-type transcriptional regulator LutR, at 542,073 to 542,810
GFF2833
GFF2834 - Acetyl-coenzyme A synthetase, at 542,794 to 544,479
GFF2834
GFF2835 - Acetyl-CoA:oxalate CoA-transferase, at 544,532 to 545,746
GFF2835
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -1
0
1 at 541.796 kb on + strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.907 kb on - strand, within GFF2832 at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.125 kb on + strand at 542.488 kb on + strand, within GFF2833 at 542.488 kb on + strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.584 kb on + strand, within GFF2833 at 542.584 kb on + strand, within GFF2833 at 542.585 kb on - strand, within GFF2833 at 542.924 kb on + strand at 542.925 kb on - strand at 542.928 kb on + strand at 542.928 kb on + strand at 542.928 kb on + strand at 542.929 kb on - strand at 542.930 kb on + strand at 543.120 kb on + strand, within GFF2834 at 543.126 kb on - strand, within GFF2834 at 543.168 kb on - strand, within GFF2834 at 543.173 kb on + strand, within GFF2834 at 543.173 kb on + strand, within GFF2834 at 543.173 kb on + strand, within GFF2834 at 543.173 kb on + strand, within GFF2834 at 543.173 kb on + strand, within GFF2834 at 543.174 kb on - strand, within GFF2834 at 543.273 kb on - strand, within GFF2834 at 543.422 kb on + strand, within GFF2834 at 543.422 kb on + strand, within GFF2834 at 543.423 kb on - strand, within GFF2834 at 543.821 kb on + strand, within GFF2834 at 543.821 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.878 kb on + strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.879 kb on - strand, within GFF2834 at 543.881 kb on + strand, within GFF2834 at 544.095 kb on - strand, within GFF2834 at 544.188 kb on + strand, within GFF2834 at 544.189 kb on - strand, within GFF2834 at 544.525 kb on + strand at 544.579 kb on - strand at 544.659 kb on + strand, within GFF2835 at 544.660 kb on - strand, within GFF2835 at 544.996 kb on - strand, within GFF2835 at 544.996 kb on - strand, within GFF2835 at 545.004 kb on + strand, within GFF2835 at 545.286 kb on + strand, within GFF2835 at 545.353 kb on - strand, within GFF2835 at 545.353 kb on - strand, within GFF2835 at 545.388 kb on + strand, within GFF2835 at 545.388 kb on + strand, within GFF2835
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 541,796 + GFF2832 0.61 +1.2 541,797 - GFF2832 0.61 -0.8 541,797 - GFF2832 0.61 -0.3 541,907 - GFF2832 0.76 +0.9 542,088 - -0.6 542,088 - -0.3 542,088 - +0.4 542,088 - +0.9 542,125 + +1.5 542,488 + GFF2833 0.56 +0.1 542,488 + GFF2833 0.56 +0.5 542,489 - GFF2833 0.56 -0.5 542,489 - GFF2833 0.56 -0.8 542,489 - GFF2833 0.56 +1.0 542,584 + GFF2833 0.69 +1.0 542,584 + GFF2833 0.69 -0.1 542,585 - GFF2833 0.69 -0.8 542,924 + -1.1 542,925 - -0.2 542,928 + -0.9 542,928 + +0.2 542,928 + +0.9 542,929 - +0.7 542,930 + -0.5 543,120 + GFF2834 0.19 -0.6 543,126 - GFF2834 0.20 +0.1 543,168 - GFF2834 0.22 -0.8 543,173 + GFF2834 0.22 +0.3 543,173 + GFF2834 0.22 -0.3 543,173 + GFF2834 0.22 +0.3 543,173 + GFF2834 0.22 -0.1 543,173 + GFF2834 0.22 -1.1 543,174 - GFF2834 0.23 -1.1 543,273 - GFF2834 0.28 -0.4 543,422 + GFF2834 0.37 -0.9 543,422 + GFF2834 0.37 -0.2 543,423 - GFF2834 0.37 +0.3 543,821 + GFF2834 0.61 -0.3 543,821 + GFF2834 0.61 -0.7 543,878 + GFF2834 0.64 -0.3 543,878 + GFF2834 0.64 +0.3 543,878 + GFF2834 0.64 -0.2 543,878 + GFF2834 0.64 +0.2 543,878 + GFF2834 0.64 -0.5 543,878 + GFF2834 0.64 -0.4 543,878 + GFF2834 0.64 +0.5 543,878 + GFF2834 0.64 +0.2 543,878 + GFF2834 0.64 +0.3 543,878 + GFF2834 0.64 -1.4 543,879 - GFF2834 0.64 -0.3 543,879 - GFF2834 0.64 -0.1 543,879 - GFF2834 0.64 +0.5 543,879 - GFF2834 0.64 -0.5 543,881 + GFF2834 0.64 +0.3 544,095 - GFF2834 0.77 +0.2 544,188 + GFF2834 0.83 -0.2 544,189 - GFF2834 0.83 -0.6 544,525 + +0.4 544,579 - -0.1 544,659 + GFF2835 0.10 -0.4 544,660 - GFF2835 0.11 -0.9 544,996 - GFF2835 0.38 -0.2 544,996 - GFF2835 0.38 -1.4 545,004 + GFF2835 0.39 -1.2 545,286 + GFF2835 0.62 +0.5 545,353 - GFF2835 0.68 -0.1 545,353 - GFF2835 0.68 +0.1 545,388 + GFF2835 0.70 +0.2 545,388 + GFF2835 0.70 -0.3
Or see this region's nucleotide sequence