Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2830 and GFF2831 are separated by 66 nucleotides GFF2831 and GFF2832 are separated by 86 nucleotides GFF2832 and GFF2833 overlap by 4 nucleotides GFF2833 and GFF2834 overlap by 17 nucleotides
GFF2830 - hypothetical protein, at 539,699 to 540,427
GFF2830
GFF2831 - putative oxidoreductase, at 540,494 to 541,270
GFF2831
GFF2832 - Nitrobenzene nitroreductase, at 541,357 to 542,076
GFF2832
GFF2833 - HTH-type transcriptional regulator LutR, at 542,073 to 542,810
GFF2833
GFF2834 - Acetyl-coenzyme A synthetase, at 542,794 to 544,479
GFF2834
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1 at 540.425 kb on + strand at 540.780 kb on + strand, within GFF2831 at 540.780 kb on + strand, within GFF2831 at 540.780 kb on + strand, within GFF2831 at 540.808 kb on - strand, within GFF2831 at 540.808 kb on - strand, within GFF2831 at 540.906 kb on + strand, within GFF2831 at 540.906 kb on + strand, within GFF2831 at 541.517 kb on + strand, within GFF2832 at 541.517 kb on + strand, within GFF2832 at 541.517 kb on + strand, within GFF2832 at 541.518 kb on - strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.599 kb on - strand, within GFF2832 at 541.641 kb on - strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.796 kb on + strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.907 kb on - strand, within GFF2832 at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.125 kb on + strand at 542.488 kb on + strand, within GFF2833 at 542.488 kb on + strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.489 kb on - strand, within GFF2833 at 542.584 kb on + strand, within GFF2833 at 542.584 kb on + strand, within GFF2833 at 542.585 kb on - strand, within GFF2833 at 542.924 kb on + strand at 542.925 kb on - strand at 542.928 kb on + strand at 542.928 kb on + strand at 542.928 kb on + strand at 542.929 kb on - strand at 542.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 540,425 + +0.5 540,780 + GFF2831 0.37 -0.6 540,780 + GFF2831 0.37 +0.1 540,780 + GFF2831 0.37 -0.8 540,808 - GFF2831 0.40 -0.9 540,808 - GFF2831 0.40 -0.9 540,906 + GFF2831 0.53 -0.6 540,906 + GFF2831 0.53 -0.6 541,517 + GFF2832 0.22 +0.1 541,517 + GFF2832 0.22 +0.2 541,517 + GFF2832 0.22 -0.5 541,518 - GFF2832 0.22 -1.9 541,598 + GFF2832 0.33 +0.9 541,598 + GFF2832 0.33 -0.1 541,598 + GFF2832 0.33 -0.7 541,599 - GFF2832 0.34 -0.7 541,641 - GFF2832 0.39 -0.5 541,736 + GFF2832 0.53 -0.5 541,736 + GFF2832 0.53 -1.2 541,736 + GFF2832 0.53 +0.7 541,772 + GFF2832 0.58 +1.2 541,772 + GFF2832 0.58 -0.0 541,772 + GFF2832 0.58 -0.3 541,772 + GFF2832 0.58 +0.7 541,772 + GFF2832 0.58 -1.4 541,772 + GFF2832 0.58 -0.0 541,772 + GFF2832 0.58 -0.4 541,796 + GFF2832 0.61 +1.2 541,797 - GFF2832 0.61 -0.8 541,797 - GFF2832 0.61 -0.3 541,907 - GFF2832 0.76 +0.9 542,088 - -0.6 542,088 - -0.3 542,088 - +0.4 542,088 - +0.9 542,125 + +1.5 542,488 + GFF2833 0.56 +0.1 542,488 + GFF2833 0.56 +0.5 542,489 - GFF2833 0.56 -0.5 542,489 - GFF2833 0.56 -0.8 542,489 - GFF2833 0.56 +1.0 542,584 + GFF2833 0.69 +1.0 542,584 + GFF2833 0.69 -0.1 542,585 - GFF2833 0.69 -0.8 542,924 + -1.1 542,925 - -0.2 542,928 + -0.9 542,928 + +0.2 542,928 + +0.9 542,929 - +0.7 542,930 + -0.5
Or see this region's nucleotide sequence