Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2829 and GFF2830 are separated by 177 nucleotides GFF2830 and GFF2831 are separated by 66 nucleotides GFF2831 and GFF2832 are separated by 86 nucleotides GFF2832 and GFF2833 overlap by 4 nucleotides
GFF2829 - Kynurenine formamidase, at 538,748 to 539,521
GFF2829
GFF2830 - hypothetical protein, at 539,699 to 540,427
GFF2830
GFF2831 - putative oxidoreductase, at 540,494 to 541,270
GFF2831
GFF2832 - Nitrobenzene nitroreductase, at 541,357 to 542,076
GFF2832
GFF2833 - HTH-type transcriptional regulator LutR, at 542,073 to 542,810
GFF2833
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1 at 539.559 kb on + strand at 539.559 kb on + strand at 539.861 kb on + strand, within GFF2830 at 539.862 kb on - strand, within GFF2830 at 539.924 kb on + strand, within GFF2830 at 539.925 kb on - strand, within GFF2830 at 539.925 kb on - strand, within GFF2830 at 539.928 kb on - strand, within GFF2830 at 539.928 kb on - strand, within GFF2830 at 539.928 kb on - strand, within GFF2830 at 539.938 kb on + strand, within GFF2830 at 539.995 kb on + strand, within GFF2830 at 539.995 kb on + strand, within GFF2830 at 539.995 kb on + strand, within GFF2830 at 539.996 kb on - strand, within GFF2830 at 539.996 kb on - strand, within GFF2830 at 540.090 kb on - strand, within GFF2830 at 540.182 kb on + strand, within GFF2830 at 540.182 kb on + strand, within GFF2830 at 540.183 kb on - strand, within GFF2830 at 540.183 kb on - strand, within GFF2830 at 540.183 kb on - strand, within GFF2830 at 540.263 kb on + strand, within GFF2830 at 540.263 kb on + strand, within GFF2830 at 540.269 kb on + strand, within GFF2830 at 540.270 kb on - strand, within GFF2830 at 540.270 kb on - strand, within GFF2830 at 540.270 kb on - strand, within GFF2830 at 540.270 kb on - strand, within GFF2830 at 540.293 kb on + strand, within GFF2830 at 540.294 kb on - strand, within GFF2830 at 540.425 kb on + strand at 540.780 kb on + strand, within GFF2831 at 540.780 kb on + strand, within GFF2831 at 540.780 kb on + strand, within GFF2831 at 540.808 kb on - strand, within GFF2831 at 540.808 kb on - strand, within GFF2831 at 540.906 kb on + strand, within GFF2831 at 540.906 kb on + strand, within GFF2831 at 541.517 kb on + strand, within GFF2832 at 541.517 kb on + strand, within GFF2832 at 541.517 kb on + strand, within GFF2832 at 541.518 kb on - strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.598 kb on + strand, within GFF2832 at 541.599 kb on - strand, within GFF2832 at 541.641 kb on - strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.736 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.772 kb on + strand, within GFF2832 at 541.796 kb on + strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.797 kb on - strand, within GFF2832 at 541.907 kb on - strand, within GFF2832 at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.088 kb on - strand at 542.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 539,559 + -0.1 539,559 + -1.5 539,861 + GFF2830 0.22 +0.3 539,862 - GFF2830 0.22 +0.2 539,924 + GFF2830 0.31 -0.1 539,925 - GFF2830 0.31 -1.1 539,925 - GFF2830 0.31 +0.1 539,928 - GFF2830 0.31 -0.5 539,928 - GFF2830 0.31 +0.0 539,928 - GFF2830 0.31 -0.6 539,938 + GFF2830 0.33 +0.2 539,995 + GFF2830 0.41 -0.1 539,995 + GFF2830 0.41 -0.3 539,995 + GFF2830 0.41 -0.8 539,996 - GFF2830 0.41 +0.4 539,996 - GFF2830 0.41 -0.2 540,090 - GFF2830 0.54 +0.1 540,182 + GFF2830 0.66 -0.9 540,182 + GFF2830 0.66 -0.6 540,183 - GFF2830 0.66 -0.1 540,183 - GFF2830 0.66 -0.7 540,183 - GFF2830 0.66 -0.8 540,263 + GFF2830 0.77 +0.1 540,263 + GFF2830 0.77 -0.3 540,269 + GFF2830 0.78 -0.9 540,270 - GFF2830 0.78 -0.8 540,270 - GFF2830 0.78 -1.1 540,270 - GFF2830 0.78 -0.3 540,270 - GFF2830 0.78 -0.5 540,293 + GFF2830 0.81 +0.7 540,294 - GFF2830 0.82 +0.1 540,425 + +0.5 540,780 + GFF2831 0.37 -0.6 540,780 + GFF2831 0.37 +0.1 540,780 + GFF2831 0.37 -0.8 540,808 - GFF2831 0.40 -0.9 540,808 - GFF2831 0.40 -0.9 540,906 + GFF2831 0.53 -0.6 540,906 + GFF2831 0.53 -0.6 541,517 + GFF2832 0.22 +0.1 541,517 + GFF2832 0.22 +0.2 541,517 + GFF2832 0.22 -0.5 541,518 - GFF2832 0.22 -1.9 541,598 + GFF2832 0.33 +0.9 541,598 + GFF2832 0.33 -0.1 541,598 + GFF2832 0.33 -0.7 541,599 - GFF2832 0.34 -0.7 541,641 - GFF2832 0.39 -0.5 541,736 + GFF2832 0.53 -0.5 541,736 + GFF2832 0.53 -1.2 541,736 + GFF2832 0.53 +0.7 541,772 + GFF2832 0.58 +1.2 541,772 + GFF2832 0.58 -0.0 541,772 + GFF2832 0.58 -0.3 541,772 + GFF2832 0.58 +0.7 541,772 + GFF2832 0.58 -1.4 541,772 + GFF2832 0.58 -0.0 541,772 + GFF2832 0.58 -0.4 541,796 + GFF2832 0.61 +1.2 541,797 - GFF2832 0.61 -0.8 541,797 - GFF2832 0.61 -0.3 541,907 - GFF2832 0.76 +0.9 542,088 - -0.6 542,088 - -0.3 542,088 - +0.4 542,088 - +0.9 542,125 + +1.5
Or see this region's nucleotide sequence