Strain Fitness in Xanthobacter sp. DMC5 around GFF2813

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2812 and GFF2813 are separated by 37 nucleotidesGFF2813 and GFF2814 are separated by 22 nucleotides GFF2812 - Fatty acid oxidation complex subunit alpha, at 519,180 to 521,237 GFF2812 GFF2813 - Medium-chain fatty-acid--CoA ligase, at 521,275 to 522,933 GFF2813 GFF2814 - Acyl-CoA dehydrogenase, at 522,956 to 524,128 GFF2814 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 520.370 kb on + strand, within GFF2812at 520.370 kb on + strand, within GFF2812at 521.101 kb on - strandat 521.294 kb on + strandat 521.295 kb on - strandat 521.295 kb on - strandat 521.390 kb on + strandat 521.391 kb on - strandat 521.391 kb on - strandat 521.546 kb on + strand, within GFF2813at 521.546 kb on + strand, within GFF2813at 521.546 kb on + strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.666 kb on + strand, within GFF2813at 521.715 kb on - strand, within GFF2813at 521.832 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.263 kb on + strand, within GFF2813at 522.263 kb on + strand, within GFF2813at 522.263 kb on + strand, within GFF2813at 522.263 kb on + strand, within GFF2813at 522.263 kb on + strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.264 kb on - strand, within GFF2813at 522.309 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.320 kb on + strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.321 kb on - strand, within GFF2813at 522.644 kb on + strand, within GFF2813at 522.644 kb on + strand, within GFF2813at 522.645 kb on - strand, within GFF2813at 522.645 kb on - strand, within GFF2813at 522.645 kb on - strand, within GFF2813at 522.645 kb on - strand, within GFF2813at 522.761 kb on + strand, within GFF2813at 522.761 kb on + strand, within GFF2813at 522.762 kb on - strand, within GFF2813at 522.762 kb on - strand, within GFF2813at 522.848 kb on + strandat 522.849 kb on - strandat 522.864 kb on + strandat 523.086 kb on + strand, within GFF2814at 523.086 kb on + strand, within GFF2814at 523.131 kb on + strand, within GFF2814at 523.132 kb on - strand, within GFF2814at 523.132 kb on - strand, within GFF2814at 523.215 kb on + strand, within GFF2814at 523.215 kb on + strand, within GFF2814at 523.216 kb on - strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.323 kb on + strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.324 kb on - strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.671 kb on + strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.672 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.858 kb on - strand, within GFF2814at 523.908 kb on + strand, within GFF2814at 523.908 kb on + strand, within GFF2814

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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520,370 + GFF2812 0.58 -0.2
520,370 + GFF2812 0.58 -0.1
521,101 - +1.0
521,294 + +0.0
521,295 - -0.9
521,295 - -1.0
521,390 + +0.5
521,391 - -0.0
521,391 - -0.2
521,546 + GFF2813 0.16 -0.2
521,546 + GFF2813 0.16 +0.4
521,546 + GFF2813 0.16 -0.6
521,547 - GFF2813 0.16 +0.7
521,547 - GFF2813 0.16 -1.7
521,547 - GFF2813 0.16 -0.3
521,547 - GFF2813 0.16 -0.7
521,547 - GFF2813 0.16 -0.7
521,630 + GFF2813 0.21 +0.1
521,630 + GFF2813 0.21 +0.2
521,630 + GFF2813 0.21 +0.5
521,630 + GFF2813 0.21 +0.7
521,631 - GFF2813 0.21 -0.6
521,631 - GFF2813 0.21 -0.6
521,631 - GFF2813 0.21 -0.7
521,666 + GFF2813 0.24 -0.3
521,715 - GFF2813 0.27 -1.5
521,832 + GFF2813 0.34 +1.9
522,167 + GFF2813 0.54 -0.1
522,167 + GFF2813 0.54 -0.4
522,167 + GFF2813 0.54 -0.3
522,167 + GFF2813 0.54 +0.3
522,168 - GFF2813 0.54 -0.2
522,168 - GFF2813 0.54 -0.6
522,168 - GFF2813 0.54 -0.0
522,168 - GFF2813 0.54 -1.5
522,168 - GFF2813 0.54 +0.0
522,263 + GFF2813 0.60 -0.5
522,263 + GFF2813 0.60 -0.1
522,263 + GFF2813 0.60 -0.3
522,263 + GFF2813 0.60 +0.4
522,263 + GFF2813 0.60 -0.6
522,264 - GFF2813 0.60 +0.2
522,264 - GFF2813 0.60 +0.4
522,264 - GFF2813 0.60 +0.2
522,264 - GFF2813 0.60 -0.5
522,264 - GFF2813 0.60 +0.1
522,264 - GFF2813 0.60 -0.0
522,264 - GFF2813 0.60 -0.7
522,309 + GFF2813 0.62 -0.0
522,320 + GFF2813 0.63 +0.3
522,320 + GFF2813 0.63 -0.5
522,320 + GFF2813 0.63 -0.6
522,320 + GFF2813 0.63 +0.6
522,320 + GFF2813 0.63 -0.2
522,320 + GFF2813 0.63 +1.0
522,321 - GFF2813 0.63 -0.4
522,321 - GFF2813 0.63 +0.7
522,321 - GFF2813 0.63 -0.1
522,321 - GFF2813 0.63 +0.4
522,321 - GFF2813 0.63 -1.2
522,321 - GFF2813 0.63 -1.2
522,321 - GFF2813 0.63 -0.1
522,321 - GFF2813 0.63 +0.6
522,321 - GFF2813 0.63 +0.2
522,644 + GFF2813 0.83 -1.2
522,644 + GFF2813 0.83 -0.5
522,645 - GFF2813 0.83 +1.1
522,645 - GFF2813 0.83 -1.5
522,645 - GFF2813 0.83 +0.3
522,645 - GFF2813 0.83 +0.7
522,761 + GFF2813 0.90 -1.4
522,761 + GFF2813 0.90 -1.0
522,762 - GFF2813 0.90 +0.9
522,762 - GFF2813 0.90 +0.1
522,848 + -1.0
522,849 - +0.5
522,864 + +0.4
523,086 + GFF2814 0.11 +0.6
523,086 + GFF2814 0.11 -0.4
523,131 + GFF2814 0.15 -0.3
523,132 - GFF2814 0.15 +0.2
523,132 - GFF2814 0.15 -0.0
523,215 + GFF2814 0.22 -0.5
523,215 + GFF2814 0.22 -1.8
523,216 - GFF2814 0.22 +0.3
523,323 + GFF2814 0.31 -0.5
523,323 + GFF2814 0.31 -0.1
523,323 + GFF2814 0.31 -0.6
523,323 + GFF2814 0.31 -0.1
523,323 + GFF2814 0.31 -0.1
523,323 + GFF2814 0.31 -0.3
523,323 + GFF2814 0.31 +0.5
523,323 + GFF2814 0.31 -0.5
523,324 - GFF2814 0.31 -1.1
523,324 - GFF2814 0.31 -0.5
523,324 - GFF2814 0.31 -0.7
523,671 + GFF2814 0.61 -0.8
523,671 + GFF2814 0.61 +1.3
523,671 + GFF2814 0.61 +0.6
523,671 + GFF2814 0.61 +0.6
523,672 - GFF2814 0.61 -1.1
523,672 - GFF2814 0.61 -0.0
523,672 - GFF2814 0.61 +0.1
523,672 - GFF2814 0.61 +0.4
523,858 - GFF2814 0.77 +0.4
523,858 - GFF2814 0.77 +0.3
523,858 - GFF2814 0.77 +0.1
523,908 + GFF2814 0.81 +0.1
523,908 + GFF2814 0.81 -0.5

Or see this region's nucleotide sequence