Strain Fitness in Xanthobacter sp. DMC5 around GFF2805

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2803 and GFF2804 are separated by 60 nucleotidesGFF2804 and GFF2805 overlap by 1 nucleotidesGFF2805 and GFF2806 are separated by 265 nucleotides GFF2803 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, at 508,958 to 509,719 GFF2803 GFF2804 - hypothetical protein, at 509,780 to 510,079 GFF2804 GFF2805 - Ferredoxin--NADP reductase, at 510,079 to 511,722 GFF2805 GFF2806 - Pyruvate dehydrogenase [ubiquinone], at 511,988 to 513,721 GFF2806 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.154 kb on - strand, within GFF2803at 509.246 kb on + strand, within GFF2803at 509.246 kb on + strand, within GFF2803at 509.247 kb on - strand, within GFF2803at 509.247 kb on - strand, within GFF2803at 509.294 kb on + strand, within GFF2803at 509.363 kb on + strand, within GFF2803at 509.363 kb on + strand, within GFF2803at 509.363 kb on + strand, within GFF2803at 509.363 kb on + strand, within GFF2803at 509.472 kb on - strand, within GFF2803at 509.771 kb on + strandat 509.772 kb on - strandat 509.784 kb on + strandat 509.784 kb on + strandat 509.784 kb on + strandat 509.784 kb on + strandat 509.785 kb on - strandat 509.785 kb on - strandat 509.785 kb on - strandat 509.850 kb on + strand, within GFF2804at 509.850 kb on + strand, within GFF2804at 509.850 kb on + strand, within GFF2804at 509.850 kb on + strand, within GFF2804at 509.851 kb on - strand, within GFF2804at 509.851 kb on - strand, within GFF2804at 509.880 kb on + strand, within GFF2804at 509.881 kb on - strand, within GFF2804at 509.881 kb on - strand, within GFF2804at 509.881 kb on - strand, within GFF2804at 510.551 kb on + strand, within GFF2805at 510.894 kb on - strand, within GFF2805at 510.894 kb on - strand, within GFF2805at 510.980 kb on + strand, within GFF2805at 510.981 kb on - strand, within GFF2805at 511.031 kb on + strand, within GFF2805at 511.601 kb on + strandat 511.602 kb on - strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.689 kb on - strandat 511.689 kb on - strandat 511.689 kb on - strandat 511.786 kb on - strandat 511.798 kb on - strandat 511.813 kb on + strandat 511.813 kb on + strandat 511.813 kb on + strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.814 kb on - strandat 511.816 kb on - strandat 511.827 kb on + strandat 511.827 kb on + strandat 511.827 kb on + strandat 511.828 kb on - strandat 511.828 kb on - strandat 512.001 kb on + strandat 512.051 kb on + strandat 512.230 kb on + strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.231 kb on - strand, within GFF2806at 512.319 kb on - strand, within GFF2806at 512.319 kb on - strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.402 kb on + strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.403 kb on - strand, within GFF2806at 512.717 kb on + strand, within GFF2806at 512.717 kb on + strand, within GFF2806at 512.718 kb on - strand, within GFF2806

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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509,154 - GFF2803 0.26 -0.9
509,246 + GFF2803 0.38 +0.1
509,246 + GFF2803 0.38 -0.3
509,247 - GFF2803 0.38 -2.4
509,247 - GFF2803 0.38 +0.4
509,294 + GFF2803 0.44 +0.4
509,363 + GFF2803 0.53 -0.5
509,363 + GFF2803 0.53 +1.0
509,363 + GFF2803 0.53 +0.6
509,363 + GFF2803 0.53 -1.2
509,472 - GFF2803 0.67 +0.6
509,771 + -1.1
509,772 - -0.7
509,784 + +0.3
509,784 + +0.4
509,784 + +0.6
509,784 + -0.4
509,785 - -0.4
509,785 - -0.0
509,785 - +1.0
509,850 + GFF2804 0.23 +1.1
509,850 + GFF2804 0.23 -1.1
509,850 + GFF2804 0.23 +0.2
509,850 + GFF2804 0.23 +1.0
509,851 - GFF2804 0.24 -0.9
509,851 - GFF2804 0.24 -0.1
509,880 + GFF2804 0.33 -0.1
509,881 - GFF2804 0.34 +0.2
509,881 - GFF2804 0.34 -0.3
509,881 - GFF2804 0.34 +0.5
510,551 + GFF2805 0.29 -0.8
510,894 - GFF2805 0.50 -1.2
510,894 - GFF2805 0.50 -0.4
510,980 + GFF2805 0.55 -0.7
510,981 - GFF2805 0.55 -0.8
511,031 + GFF2805 0.58 -0.1
511,601 + -0.2
511,602 - +0.7
511,688 + +0.2
511,688 + +0.2
511,688 + -1.2
511,688 + -0.3
511,688 + -0.9
511,688 + -0.0
511,688 + -0.4
511,688 + +0.7
511,689 - -0.5
511,689 - -0.2
511,689 - +0.6
511,786 - +0.6
511,798 - -1.0
511,813 + -0.5
511,813 + +0.0
511,813 + -0.6
511,814 - +0.4
511,814 - +0.1
511,814 - -1.0
511,814 - -0.1
511,814 - +0.6
511,814 - +1.9
511,816 - -0.2
511,827 + -0.2
511,827 + -0.8
511,827 + -0.0
511,828 - -0.1
511,828 - -0.0
512,001 + -0.1
512,051 + +0.5
512,230 + GFF2806 0.14 +0.7
512,231 - GFF2806 0.14 -0.3
512,231 - GFF2806 0.14 +0.3
512,231 - GFF2806 0.14 -1.0
512,319 - GFF2806 0.19 -0.6
512,319 - GFF2806 0.19 +0.7
512,402 + GFF2806 0.24 -1.4
512,402 + GFF2806 0.24 -0.8
512,402 + GFF2806 0.24 -0.5
512,403 - GFF2806 0.24 +0.3
512,403 - GFF2806 0.24 -0.7
512,403 - GFF2806 0.24 +0.3
512,403 - GFF2806 0.24 +0.2
512,717 + GFF2806 0.42 +0.1
512,717 + GFF2806 0.42 -0.1
512,718 - GFF2806 0.42 -0.0

Or see this region's nucleotide sequence