Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2752 and GFF2753 are separated by 116 nucleotides GFF2753 and GFF2754 are separated by 169 nucleotides GFF2754 and GFF2755 are separated by 44 nucleotides
GFF2752 - putative siderophore-binding lipoprotein YfiY, at 453,771 to 454,727
GFF2752
GFF2753 - hypothetical protein, at 454,844 to 455,731
GFF2753
GFF2754 - hypothetical protein, at 455,901 to 456,605
GFF2754
GFF2755 - Soluble epoxide hydrolase, at 456,650 to 457,513
GFF2755
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2 at 454.121 kb on + strand, within GFF2752 at 454.121 kb on + strand, within GFF2752 at 454.122 kb on - strand, within GFF2752 at 454.215 kb on + strand, within GFF2752 at 454.216 kb on - strand, within GFF2752 at 454.216 kb on - strand, within GFF2752 at 454.618 kb on - strand, within GFF2752 at 454.652 kb on + strand at 454.652 kb on + strand at 454.653 kb on - strand at 454.943 kb on + strand, within GFF2753 at 454.944 kb on - strand, within GFF2753 at 454.944 kb on - strand, within GFF2753 at 454.944 kb on - strand, within GFF2753 at 455.318 kb on + strand, within GFF2753 at 455.318 kb on + strand, within GFF2753 at 455.318 kb on + strand, within GFF2753 at 455.319 kb on - strand, within GFF2753 at 455.319 kb on - strand, within GFF2753 at 455.319 kb on - strand, within GFF2753 at 455.319 kb on - strand, within GFF2753 at 455.357 kb on + strand, within GFF2753 at 455.357 kb on + strand, within GFF2753 at 455.358 kb on - strand, within GFF2753 at 455.696 kb on + strand at 455.696 kb on + strand at 455.696 kb on + strand at 455.697 kb on - strand at 456.068 kb on + strand, within GFF2754 at 456.073 kb on + strand, within GFF2754 at 456.073 kb on + strand, within GFF2754 at 456.074 kb on - strand, within GFF2754 at 456.074 kb on - strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.334 kb on + strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.335 kb on - strand, within GFF2754 at 456.520 kb on + strand, within GFF2754 at 456.521 kb on - strand, within GFF2754
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 454,121 + GFF2752 0.37 -0.7 454,121 + GFF2752 0.37 -1.0 454,122 - GFF2752 0.37 -2.2 454,215 + GFF2752 0.46 +0.4 454,216 - GFF2752 0.46 -0.0 454,216 - GFF2752 0.46 -0.2 454,618 - GFF2752 0.89 +0.4 454,652 + +0.1 454,652 + -0.2 454,653 - +0.8 454,943 + GFF2753 0.11 -0.0 454,944 - GFF2753 0.11 +0.3 454,944 - GFF2753 0.11 -0.2 454,944 - GFF2753 0.11 +0.1 455,318 + GFF2753 0.53 +0.3 455,318 + GFF2753 0.53 -0.1 455,318 + GFF2753 0.53 +0.8 455,319 - GFF2753 0.53 -0.2 455,319 - GFF2753 0.53 +0.1 455,319 - GFF2753 0.53 +0.5 455,319 - GFF2753 0.53 +1.6 455,357 + GFF2753 0.58 -1.0 455,357 + GFF2753 0.58 +0.2 455,358 - GFF2753 0.58 +0.1 455,696 + +1.9 455,696 + -1.2 455,696 + -0.5 455,697 - +0.3 456,068 + GFF2754 0.24 +0.5 456,073 + GFF2754 0.24 -0.1 456,073 + GFF2754 0.24 +0.3 456,074 - GFF2754 0.25 +1.0 456,074 - GFF2754 0.25 +0.3 456,334 + GFF2754 0.61 -0.0 456,334 + GFF2754 0.61 +0.2 456,334 + GFF2754 0.61 +0.2 456,334 + GFF2754 0.61 -0.4 456,335 - GFF2754 0.62 +0.0 456,335 - GFF2754 0.62 +0.3 456,335 - GFF2754 0.62 +0.2 456,335 - GFF2754 0.62 +0.1 456,520 + GFF2754 0.88 -0.3 456,521 - GFF2754 0.88 +0.1
Or see this region's nucleotide sequence