Strain Fitness in Xanthobacter sp. DMC5 around GFF2739

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2738 and GFF2739 are separated by 182 nucleotidesGFF2739 and GFF2740 are separated by 442 nucleotides GFF2738 - Efflux pump membrane transporter BepE, at 433,316 to 436,399 GFF2738 GFF2739 - hypothetical protein, at 436,582 to 437,784 GFF2739 GFF2740 - Nucleoid occlusion factor SlmA, at 438,227 to 438,991 GFF2740 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1at 435.589 kb on + strand, within GFF2738at 435.611 kb on + strand, within GFF2738at 435.611 kb on + strand, within GFF2738at 435.612 kb on - strand, within GFF2738at 435.612 kb on - strand, within GFF2738at 435.809 kb on + strand, within GFF2738at 435.810 kb on - strand, within GFF2738at 435.810 kb on - strand, within GFF2738at 435.810 kb on - strand, within GFF2738at 435.811 kb on + strand, within GFF2738at 435.811 kb on + strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.812 kb on - strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.842 kb on + strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 435.843 kb on - strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.028 kb on + strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.029 kb on - strand, within GFF2738at 436.030 kb on + strand, within GFF2738at 436.031 kb on - strand, within GFF2738at 436.192 kb on + strandat 436.193 kb on - strandat 436.197 kb on + strandat 436.197 kb on + strandat 436.198 kb on - strandat 436.254 kb on - strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.307 kb on + strandat 436.308 kb on - strandat 436.308 kb on - strandat 436.308 kb on - strandat 436.308 kb on - strandat 436.325 kb on + strandat 436.325 kb on + strandat 436.326 kb on - strandat 436.397 kb on + strandat 436.397 kb on + strandat 436.397 kb on + strandat 436.397 kb on + strandat 436.397 kb on + strandat 436.398 kb on - strandat 436.529 kb on + strandat 436.529 kb on + strandat 436.530 kb on - strandat 436.530 kb on - strandat 436.530 kb on - strandat 436.549 kb on + strandat 436.550 kb on - strandat 436.550 kb on - strandat 436.550 kb on - strandat 436.550 kb on - strandat 436.592 kb on + strandat 436.592 kb on + strandat 436.593 kb on - strandat 436.593 kb on - strandat 436.593 kb on - strandat 436.593 kb on - strandat 436.634 kb on + strandat 436.709 kb on + strand, within GFF2739at 436.710 kb on - strand, within GFF2739at 436.710 kb on - strand, within GFF2739at 436.710 kb on - strand, within GFF2739at 436.773 kb on + strand, within GFF2739at 436.773 kb on + strand, within GFF2739at 436.774 kb on - strand, within GFF2739at 436.855 kb on + strand, within GFF2739at 436.855 kb on + strand, within GFF2739at 436.855 kb on + strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.856 kb on - strand, within GFF2739at 436.899 kb on - strand, within GFF2739at 436.899 kb on - strand, within GFF2739at 436.899 kb on - strand, within GFF2739at 436.899 kb on - strand, within GFF2739at 436.934 kb on - strand, within GFF2739at 437.033 kb on + strand, within GFF2739at 437.033 kb on + strand, within GFF2739at 437.033 kb on + strand, within GFF2739at 437.034 kb on - strand, within GFF2739at 437.054 kb on - strand, within GFF2739at 437.066 kb on + strand, within GFF2739at 437.066 kb on + strand, within GFF2739at 437.066 kb on + strand, within GFF2739at 437.148 kb on + strand, within GFF2739at 437.484 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.495 kb on + strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.496 kb on - strand, within GFF2739at 437.534 kb on + strand, within GFF2739at 437.535 kb on - strand, within GFF2739at 437.565 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.616 kb on + strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.617 kb on - strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.618 kb on + strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.619 kb on - strand, within GFF2739at 437.637 kb on + strand, within GFF2739at 438.035 kb on - strandat 438.179 kb on + strandat 438.179 kb on + strandat 438.180 kb on - strandat 438.300 kb on + strandat 438.300 kb on + strandat 438.301 kb on - strandat 438.378 kb on + strand, within GFF2740at 438.378 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.591 kb on + strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.592 kb on - strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.708 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.717 kb on + strand, within GFF2740at 438.718 kb on - strand, within GFF2740

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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435,589 + GFF2738 0.74 -0.7
435,611 + GFF2738 0.74 +0.4
435,611 + GFF2738 0.74 +0.0
435,612 - GFF2738 0.74 +0.1
435,612 - GFF2738 0.74 -0.2
435,809 + GFF2738 0.81 +1.0
435,810 - GFF2738 0.81 +0.2
435,810 - GFF2738 0.81 -0.4
435,810 - GFF2738 0.81 +1.1
435,811 + GFF2738 0.81 -1.3
435,811 + GFF2738 0.81 -1.0
435,812 - GFF2738 0.81 +0.7
435,812 - GFF2738 0.81 -0.3
435,812 - GFF2738 0.81 -1.4
435,812 - GFF2738 0.81 +0.8
435,812 - GFF2738 0.81 -0.3
435,812 - GFF2738 0.81 -0.7
435,812 - GFF2738 0.81 -0.7
435,842 + GFF2738 0.82 +0.1
435,842 + GFF2738 0.82 -0.7
435,842 + GFF2738 0.82 +0.7
435,842 + GFF2738 0.82 -0.2
435,842 + GFF2738 0.82 +0.6
435,842 + GFF2738 0.82 -0.6
435,842 + GFF2738 0.82 +0.5
435,842 + GFF2738 0.82 -1.5
435,843 - GFF2738 0.82 -0.2
435,843 - GFF2738 0.82 -0.4
435,843 - GFF2738 0.82 -0.6
435,843 - GFF2738 0.82 +0.2
435,843 - GFF2738 0.82 -0.9
435,843 - GFF2738 0.82 -1.2
435,843 - GFF2738 0.82 -0.3
435,843 - GFF2738 0.82 -0.1
435,843 - GFF2738 0.82 -1.6
435,843 - GFF2738 0.82 +0.7
436,028 + GFF2738 0.88 +0.1
436,028 + GFF2738 0.88 +0.4
436,028 + GFF2738 0.88 -0.1
436,028 + GFF2738 0.88 +0.5
436,028 + GFF2738 0.88 -0.3
436,028 + GFF2738 0.88 +0.3
436,028 + GFF2738 0.88 +0.8
436,028 + GFF2738 0.88 -0.9
436,028 + GFF2738 0.88 -0.4
436,028 + GFF2738 0.88 +0.6
436,029 - GFF2738 0.88 +0.4
436,029 - GFF2738 0.88 +0.4
436,029 - GFF2738 0.88 -1.1
436,029 - GFF2738 0.88 -1.2
436,029 - GFF2738 0.88 -0.3
436,029 - GFF2738 0.88 -0.2
436,029 - GFF2738 0.88 +0.6
436,030 + GFF2738 0.88 +0.4
436,031 - GFF2738 0.88 -0.1
436,192 + +0.9
436,193 - +0.4
436,197 + -0.2
436,197 + -0.7
436,198 - +0.2
436,254 - +0.6
436,307 + -0.0
436,307 + +0.7
436,307 + -0.1
436,307 + +0.2
436,307 + +0.5
436,307 + +0.5
436,307 + -0.4
436,307 + +0.0
436,307 + +1.5
436,307 + -0.4
436,308 - -0.7
436,308 - +0.1
436,308 - -0.7
436,308 - -0.7
436,325 + -0.3
436,325 + +0.2
436,326 - -0.4
436,397 + +0.9
436,397 + -0.2
436,397 + -0.0
436,397 + -1.1
436,397 + -0.1
436,398 - -0.7
436,529 + -0.6
436,529 + -0.1
436,530 - +1.3
436,530 - +0.2
436,530 - +0.3
436,549 + +0.8
436,550 - +0.2
436,550 - -0.4
436,550 - +0.3
436,550 - +0.8
436,592 + +0.0
436,592 + +0.4
436,593 - +0.2
436,593 - -0.9
436,593 - -0.6
436,593 - -0.3
436,634 + +1.2
436,709 + GFF2739 0.11 +0.6
436,710 - GFF2739 0.11 +0.0
436,710 - GFF2739 0.11 +0.1
436,710 - GFF2739 0.11 +0.1
436,773 + GFF2739 0.16 -0.2
436,773 + GFF2739 0.16 -0.5
436,774 - GFF2739 0.16 -1.4
436,855 + GFF2739 0.23 -0.2
436,855 + GFF2739 0.23 -0.2
436,855 + GFF2739 0.23 -0.1
436,856 - GFF2739 0.23 -0.6
436,856 - GFF2739 0.23 +0.8
436,856 - GFF2739 0.23 +1.0
436,856 - GFF2739 0.23 -0.8
436,856 - GFF2739 0.23 -1.6
436,856 - GFF2739 0.23 -0.2
436,899 - GFF2739 0.26 -0.4
436,899 - GFF2739 0.26 -0.8
436,899 - GFF2739 0.26 -0.2
436,899 - GFF2739 0.26 -0.2
436,934 - GFF2739 0.29 +0.2
437,033 + GFF2739 0.37 -0.2
437,033 + GFF2739 0.37 +0.3
437,033 + GFF2739 0.37 -0.2
437,034 - GFF2739 0.38 -0.3
437,054 - GFF2739 0.39 -0.4
437,066 + GFF2739 0.40 -0.2
437,066 + GFF2739 0.40 -0.3
437,066 + GFF2739 0.40 +0.1
437,148 + GFF2739 0.47 -0.8
437,484 + GFF2739 0.75 -0.1
437,495 + GFF2739 0.76 -0.9
437,495 + GFF2739 0.76 -0.4
437,495 + GFF2739 0.76 +1.0
437,496 - GFF2739 0.76 +0.7
437,496 - GFF2739 0.76 +0.8
437,496 - GFF2739 0.76 -0.3
437,496 - GFF2739 0.76 +0.1
437,496 - GFF2739 0.76 -0.1
437,496 - GFF2739 0.76 -0.6
437,496 - GFF2739 0.76 +0.3
437,496 - GFF2739 0.76 -0.6
437,496 - GFF2739 0.76 -0.4
437,534 + GFF2739 0.79 -0.1
437,535 - GFF2739 0.79 +0.1
437,565 + GFF2739 0.82 -0.0
437,616 + GFF2739 0.86 -0.2
437,616 + GFF2739 0.86 +0.7
437,616 + GFF2739 0.86 -1.9
437,617 - GFF2739 0.86 +0.1
437,617 - GFF2739 0.86 -0.6
437,617 - GFF2739 0.86 -2.7
437,617 - GFF2739 0.86 +0.5
437,618 + GFF2739 0.86 -0.1
437,618 + GFF2739 0.86 -0.1
437,618 + GFF2739 0.86 +0.1
437,618 + GFF2739 0.86 +0.3
437,619 - GFF2739 0.86 -1.2
437,619 - GFF2739 0.86 +0.1
437,619 - GFF2739 0.86 -0.3
437,619 - GFF2739 0.86 +0.1
437,637 + GFF2739 0.88 -0.2
438,035 - -0.4
438,179 + -0.6
438,179 + -0.1
438,180 - +0.5
438,300 + -0.3
438,300 + +0.3
438,301 - -0.3
438,378 + GFF2740 0.20 +0.9
438,378 + GFF2740 0.20 -1.1
438,591 + GFF2740 0.48 -0.7
438,591 + GFF2740 0.48 +0.5
438,591 + GFF2740 0.48 +1.0
438,592 - GFF2740 0.48 +0.3
438,592 - GFF2740 0.48 -0.8
438,708 + GFF2740 0.63 -0.8
438,708 + GFF2740 0.63 -0.3
438,717 + GFF2740 0.64 +1.2
438,717 + GFF2740 0.64 +0.3
438,717 + GFF2740 0.64 +0.8
438,718 - GFF2740 0.64 +0.3

Or see this region's nucleotide sequence