Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF271 and GFF272 are separated by 44 nucleotides GFF272 and GFF273 overlap by 1 nucleotides GFF273 and GFF274 are separated by 299 nucleotides
GFF271 - HTH-type transcriptional repressor KstR2, at 286,703 to 287,275
GFF271
GFF272 - hypothetical protein, at 287,320 to 288,213
GFF272
GFF273 - hypothetical protein, at 288,213 to 289,022
GFF273
GFF274 - P-loop guanosine triphosphatase YjiA, at 289,322 to 290,392
GFF274
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.240 kb on + strand at 287.240 kb on + strand at 287.378 kb on + strand at 287.403 kb on - strand at 287.450 kb on + strand, within GFF272 at 287.451 kb on - strand, within GFF272 at 287.451 kb on - strand, within GFF272 at 287.456 kb on + strand, within GFF272 at 287.457 kb on - strand, within GFF272 at 287.457 kb on - strand, within GFF272 at 287.457 kb on - strand, within GFF272 at 287.534 kb on + strand, within GFF272 at 287.535 kb on - strand, within GFF272 at 287.538 kb on - strand, within GFF272 at 287.565 kb on - strand, within GFF272 at 287.565 kb on - strand, within GFF272 at 287.993 kb on + strand, within GFF272 at 287.994 kb on - strand, within GFF272 at 288.308 kb on - strand, within GFF273 at 288.454 kb on + strand, within GFF273 at 288.454 kb on + strand, within GFF273 at 288.454 kb on + strand, within GFF273 at 288.455 kb on - strand, within GFF273 at 288.455 kb on - strand, within GFF273 at 288.547 kb on + strand, within GFF273 at 288.640 kb on + strand, within GFF273 at 288.641 kb on - strand, within GFF273 at 288.641 kb on - strand, within GFF273 at 288.641 kb on - strand, within GFF273 at 288.688 kb on + strand, within GFF273 at 288.751 kb on + strand, within GFF273 at 288.751 kb on + strand, within GFF273 at 288.752 kb on - strand, within GFF273 at 288.752 kb on - strand, within GFF273 at 288.752 kb on - strand, within GFF273 at 288.850 kb on + strand, within GFF273 at 288.850 kb on + strand, within GFF273 at 288.851 kb on - strand, within GFF273 at 289.246 kb on + strand at 289.246 kb on + strand at 289.620 kb on + strand, within GFF274 at 289.625 kb on + strand, within GFF274 at 289.625 kb on + strand, within GFF274 at 289.626 kb on - strand, within GFF274 at 289.836 kb on + strand, within GFF274 at 289.837 kb on - strand, within GFF274
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 287,240 + -0.6 287,240 + +0.5 287,378 + -0.1 287,403 - +0.8 287,450 + GFF272 0.15 +0.1 287,451 - GFF272 0.15 -0.0 287,451 - GFF272 0.15 -1.8 287,456 + GFF272 0.15 +0.6 287,457 - GFF272 0.15 +0.5 287,457 - GFF272 0.15 -1.1 287,457 - GFF272 0.15 +0.2 287,534 + GFF272 0.24 +0.2 287,535 - GFF272 0.24 -0.1 287,538 - GFF272 0.24 -0.3 287,565 - GFF272 0.27 +1.0 287,565 - GFF272 0.27 -1.0 287,993 + GFF272 0.75 +0.8 287,994 - GFF272 0.75 -0.8 288,308 - GFF273 0.12 -0.4 288,454 + GFF273 0.30 +0.5 288,454 + GFF273 0.30 +0.3 288,454 + GFF273 0.30 +0.3 288,455 - GFF273 0.30 +0.0 288,455 - GFF273 0.30 -0.7 288,547 + GFF273 0.41 -0.6 288,640 + GFF273 0.53 -1.3 288,641 - GFF273 0.53 +0.7 288,641 - GFF273 0.53 +0.3 288,641 - GFF273 0.53 -0.1 288,688 + GFF273 0.59 +0.4 288,751 + GFF273 0.66 -0.9 288,751 + GFF273 0.66 +0.7 288,752 - GFF273 0.67 -0.0 288,752 - GFF273 0.67 +0.9 288,752 - GFF273 0.67 +0.9 288,850 + GFF273 0.79 -1.3 288,850 + GFF273 0.79 -0.2 288,851 - GFF273 0.79 +0.5 289,246 + -0.2 289,246 + -0.2 289,620 + GFF274 0.28 -0.3 289,625 + GFF274 0.28 -0.4 289,625 + GFF274 0.28 -0.2 289,626 - GFF274 0.28 -0.1 289,836 + GFF274 0.48 +0.1 289,837 - GFF274 0.48 -1.2
Or see this region's nucleotide sequence