Strain Fitness in Xanthobacter sp. DMC5 around GFF2713

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2711 and GFF2712 overlap by 4 nucleotidesGFF2712 and GFF2713 overlap by 8 nucleotidesGFF2713 and GFF2714 are separated by 11 nucleotides GFF2711 - hypothetical protein, at 402,884 to 403,624 GFF2711 GFF2712 - Biopolymer transport protein ExbD, at 403,621 to 404,052 GFF2712 GFF2713 - Tol-Pal system protein TolQ, at 404,045 to 404,530 GFF2713 GFF2714 - hypothetical protein, at 404,542 to 406,365 GFF2714 Position (kb) 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 403.065 kb on + strand, within GFF2711at 403.065 kb on + strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.110 kb on + strand, within GFF2711at 403.111 kb on - strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.519 kb on - strand, within GFF2711at 404.160 kb on + strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.318 kb on - strand, within GFF2713at 404.318 kb on - strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.397 kb on + strand, within GFF2713at 404.397 kb on + strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.493 kb on + strandat 404.493 kb on + strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.497 kb on - strandat 404.589 kb on + strandat 404.589 kb on + strandat 404.591 kb on + strandat 404.591 kb on + strandat 404.633 kb on + strandat 404.634 kb on - strandat 404.634 kb on - strandat 404.634 kb on - strandat 404.634 kb on - strandat 404.634 kb on - strandat 404.666 kb on + strandat 404.666 kb on + strandat 404.666 kb on + strandat 404.667 kb on - strandat 404.672 kb on + strandat 404.673 kb on - strandat 404.673 kb on - strandat 404.681 kb on + strandat 404.681 kb on + strandat 404.682 kb on - strandat 404.684 kb on + strandat 404.684 kb on + strandat 404.685 kb on - strandat 404.714 kb on + strandat 404.714 kb on + strandat 404.715 kb on - strandat 404.715 kb on - strandat 404.735 kb on + strand, within GFF2714at 404.735 kb on + strand, within GFF2714at 404.736 kb on - strand, within GFF2714at 404.736 kb on - strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.801 kb on + strand, within GFF2714at 404.802 kb on - strand, within GFF2714at 404.802 kb on - strand, within GFF2714at 404.802 kb on - strand, within GFF2714at 404.802 kb on - strand, within GFF2714at 404.802 kb on - strand, within GFF2714at 404.819 kb on + strand, within GFF2714at 404.819 kb on + strand, within GFF2714at 404.819 kb on + strand, within GFF2714at 404.820 kb on - strand, within GFF2714at 404.870 kb on + strand, within GFF2714at 404.873 kb on + strand, within GFF2714at 404.873 kb on + strand, within GFF2714at 404.874 kb on - strand, within GFF2714at 404.874 kb on - strand, within GFF2714at 404.874 kb on - strand, within GFF2714at 404.874 kb on - strand, within GFF2714at 405.175 kb on + strand, within GFF2714at 405.175 kb on + strand, within GFF2714at 405.176 kb on - strand, within GFF2714at 405.206 kb on + strand, within GFF2714at 405.207 kb on - strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.242 kb on + strand, within GFF2714at 405.243 kb on - strand, within GFF2714at 405.243 kb on - strand, within GFF2714at 405.243 kb on - strand, within GFF2714at 405.243 kb on - strand, within GFF2714at 405.248 kb on + strand, within GFF2714at 405.249 kb on - strand, within GFF2714at 405.249 kb on - strand, within GFF2714at 405.249 kb on - strand, within GFF2714at 405.350 kb on + strand, within GFF2714at 405.350 kb on + strand, within GFF2714at 405.350 kb on + strand, within GFF2714at 405.350 kb on + strand, within GFF2714at 405.350 kb on + strand, within GFF2714at 405.351 kb on - strand, within GFF2714at 405.351 kb on - strand, within GFF2714at 405.351 kb on - strand, within GFF2714at 405.351 kb on - strand, within GFF2714at 405.351 kb on - strand, within GFF2714at 405.368 kb on + strand, within GFF2714at 405.368 kb on + strand, within GFF2714at 405.369 kb on - strand, within GFF2714at 405.369 kb on - strand, within GFF2714at 405.369 kb on - strand, within GFF2714at 405.410 kb on + strand, within GFF2714at 405.428 kb on + strand, within GFF2714at 405.429 kb on - strand, within GFF2714at 405.429 kb on - strand, within GFF2714

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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403,065 + GFF2711 0.24 -0.7
403,065 + GFF2711 0.24 +0.3
403,066 - GFF2711 0.25 -0.7
403,066 - GFF2711 0.25 +0.1
403,110 + GFF2711 0.30 -0.2
403,111 - GFF2711 0.31 +0.8
403,152 + GFF2711 0.36 +0.3
403,152 + GFF2711 0.36 +0.4
403,152 + GFF2711 0.36 +0.7
403,152 + GFF2711 0.36 -0.6
403,153 - GFF2711 0.36 -0.5
403,153 - GFF2711 0.36 -0.9
403,153 - GFF2711 0.36 +1.2
403,153 - GFF2711 0.36 +0.8
403,153 - GFF2711 0.36 +0.7
403,519 - GFF2711 0.86 -0.2
404,160 + GFF2713 0.24 -0.6
404,161 - GFF2713 0.24 +0.6
404,161 - GFF2713 0.24 +0.2
404,161 - GFF2713 0.24 +0.6
404,317 + GFF2713 0.56 -0.3
404,317 + GFF2713 0.56 +0.8
404,317 + GFF2713 0.56 +0.3
404,318 - GFF2713 0.56 -0.1
404,318 - GFF2713 0.56 +0.3
404,319 + GFF2713 0.56 -0.5
404,319 + GFF2713 0.56 -0.2
404,319 + GFF2713 0.56 -0.1
404,319 + GFF2713 0.56 -0.3
404,319 + GFF2713 0.56 +0.6
404,319 + GFF2713 0.56 +0.3
404,320 - GFF2713 0.57 +0.2
404,320 - GFF2713 0.57 -0.0
404,320 - GFF2713 0.57 -0.4
404,320 - GFF2713 0.57 -0.6
404,320 - GFF2713 0.57 +0.9
404,397 + GFF2713 0.72 -0.1
404,397 + GFF2713 0.72 -0.3
404,398 - GFF2713 0.73 +0.1
404,398 - GFF2713 0.73 +0.1
404,398 - GFF2713 0.73 +0.3
404,493 + -0.2
404,493 + +0.6
404,494 - +0.5
404,494 - -0.0
404,494 - -1.1
404,494 - -0.9
404,494 - +0.3
404,497 - +0.3
404,589 + -0.7
404,589 + -0.3
404,591 + +0.9
404,591 + +0.4
404,633 + +0.8
404,634 - -0.2
404,634 - -2.8
404,634 - -1.7
404,634 - -0.4
404,634 - +0.3
404,666 + -0.2
404,666 + +0.2
404,666 + -0.2
404,667 - -0.3
404,672 + -0.2
404,673 - +0.2
404,673 - +2.4
404,681 + +0.2
404,681 + -0.4
404,682 - +0.8
404,684 + +0.3
404,684 + -0.2
404,685 - +0.5
404,714 + -1.9
404,714 + -0.0
404,715 - +0.6
404,715 - -0.5
404,735 + GFF2714 0.11 -0.4
404,735 + GFF2714 0.11 -0.1
404,736 - GFF2714 0.11 +1.1
404,736 - GFF2714 0.11 +0.8
404,801 + GFF2714 0.14 +0.4
404,801 + GFF2714 0.14 +0.2
404,801 + GFF2714 0.14 +0.8
404,801 + GFF2714 0.14 -0.3
404,801 + GFF2714 0.14 -0.9
404,801 + GFF2714 0.14 +1.0
404,801 + GFF2714 0.14 -0.2
404,801 + GFF2714 0.14 -0.2
404,801 + GFF2714 0.14 +0.0
404,802 - GFF2714 0.14 -0.7
404,802 - GFF2714 0.14 +0.2
404,802 - GFF2714 0.14 +0.1
404,802 - GFF2714 0.14 -0.1
404,802 - GFF2714 0.14 -0.1
404,819 + GFF2714 0.15 -0.2
404,819 + GFF2714 0.15 -0.5
404,819 + GFF2714 0.15 +0.2
404,820 - GFF2714 0.15 +0.3
404,870 + GFF2714 0.18 -0.2
404,873 + GFF2714 0.18 +1.1
404,873 + GFF2714 0.18 +0.9
404,874 - GFF2714 0.18 -0.1
404,874 - GFF2714 0.18 -0.2
404,874 - GFF2714 0.18 -0.2
404,874 - GFF2714 0.18 -0.4
405,175 + GFF2714 0.35 -0.1
405,175 + GFF2714 0.35 -0.1
405,176 - GFF2714 0.35 +0.2
405,206 + GFF2714 0.36 -0.7
405,207 - GFF2714 0.36 -0.4
405,242 + GFF2714 0.38 -0.2
405,242 + GFF2714 0.38 +0.3
405,242 + GFF2714 0.38 +0.9
405,242 + GFF2714 0.38 +0.2
405,242 + GFF2714 0.38 +0.8
405,242 + GFF2714 0.38 +1.1
405,242 + GFF2714 0.38 -0.5
405,243 - GFF2714 0.38 +0.8
405,243 - GFF2714 0.38 +1.0
405,243 - GFF2714 0.38 -0.3
405,243 - GFF2714 0.38 -0.0
405,248 + GFF2714 0.39 -0.6
405,249 - GFF2714 0.39 -0.0
405,249 - GFF2714 0.39 +0.4
405,249 - GFF2714 0.39 +0.6
405,350 + GFF2714 0.44 +0.4
405,350 + GFF2714 0.44 +0.4
405,350 + GFF2714 0.44 -0.4
405,350 + GFF2714 0.44 +0.2
405,350 + GFF2714 0.44 +0.8
405,351 - GFF2714 0.44 -0.4
405,351 - GFF2714 0.44 -0.5
405,351 - GFF2714 0.44 -0.9
405,351 - GFF2714 0.44 -1.0
405,351 - GFF2714 0.44 +0.1
405,368 + GFF2714 0.45 +0.5
405,368 + GFF2714 0.45 +0.7
405,369 - GFF2714 0.45 +0.6
405,369 - GFF2714 0.45 +0.6
405,369 - GFF2714 0.45 -0.2
405,410 + GFF2714 0.48 -0.4
405,428 + GFF2714 0.49 +0.3
405,429 - GFF2714 0.49 +0.3
405,429 - GFF2714 0.49 -0.8

Or see this region's nucleotide sequence