Strain Fitness in Xanthobacter sp. DMC5 around GFF2697

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2696 and GFF2697 are separated by 388 nucleotidesGFF2697 and GFF2698 overlap by 14 nucleotides GFF2696 - hypothetical protein, at 377,712 to 378,461 GFF2696 GFF2697 - Circadian clock protein kinase KaiC, at 378,850 to 380,373 GFF2697 GFF2698 - Sensor histidine kinase RcsC, at 380,360 to 382,423 GFF2698 Position (kb) 378 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 377.910 kb on + strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 377.911 kb on - strand, within GFF2696at 378.092 kb on + strand, within GFF2696at 378.092 kb on + strand, within GFF2696at 378.178 kb on - strand, within GFF2696at 378.178 kb on - strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.313 kb on + strand, within GFF2696at 378.314 kb on - strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.331 kb on + strand, within GFF2696at 378.332 kb on - strand, within GFF2696at 378.332 kb on - strand, within GFF2696at 378.358 kb on - strand, within GFF2696at 378.590 kb on + strandat 378.590 kb on + strandat 378.750 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.876 kb on + strandat 378.877 kb on - strandat 378.877 kb on - strandat 378.877 kb on - strandat 378.880 kb on + strandat 378.880 kb on + strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.881 kb on - strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.995 kb on + strandat 378.996 kb on - strandat 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.045 kb on + strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.046 kb on - strand, within GFF2697at 379.120 kb on - strand, within GFF2697at 379.120 kb on - strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.186 kb on + strand, within GFF2697at 379.187 kb on - strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.205 kb on + strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.206 kb on - strand, within GFF2697at 379.226 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.328 kb on + strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.329 kb on - strand, within GFF2697at 379.345 kb on + strand, within GFF2697at 379.345 kb on + strand, within GFF2697at 379.346 kb on - strand, within GFF2697at 379.346 kb on - strand, within GFF2697at 379.465 kb on + strand, within GFF2697at 379.465 kb on + strand, within GFF2697at 379.466 kb on - strand, within GFF2697at 379.466 kb on - strand, within GFF2697at 379.466 kb on - strand, within GFF2697at 379.466 kb on - strand, within GFF2697at 379.680 kb on + strand, within GFF2697at 379.680 kb on + strand, within GFF2697at 379.681 kb on - strand, within GFF2697at 379.681 kb on - strand, within GFF2697at 379.681 kb on - strand, within GFF2697at 379.710 kb on + strand, within GFF2697at 379.710 kb on + strand, within GFF2697at 379.710 kb on + strand, within GFF2697at 379.711 kb on - strand, within GFF2697at 379.711 kb on - strand, within GFF2697at 379.711 kb on - strand, within GFF2697at 379.711 kb on - strand, within GFF2697at 379.718 kb on + strand, within GFF2697at 379.718 kb on + strand, within GFF2697at 379.718 kb on + strand, within GFF2697at 379.718 kb on + strand, within GFF2697at 379.719 kb on - strand, within GFF2697at 379.719 kb on - strand, within GFF2697at 379.719 kb on - strand, within GFF2697at 379.859 kb on + strand, within GFF2697at 379.859 kb on + strand, within GFF2697at 379.859 kb on + strand, within GFF2697at 379.860 kb on - strand, within GFF2697at 379.866 kb on + strand, within GFF2697at 379.866 kb on + strand, within GFF2697at 379.866 kb on + strand, within GFF2697at 380.019 kb on + strand, within GFF2697at 380.019 kb on + strand, within GFF2697at 380.020 kb on - strand, within GFF2697at 380.020 kb on - strand, within GFF2697at 380.038 kb on + strand, within GFF2697at 380.038 kb on + strand, within GFF2697at 380.039 kb on - strand, within GFF2697at 380.039 kb on - strand, within GFF2697at 380.125 kb on + strand, within GFF2697at 380.125 kb on + strand, within GFF2697at 380.125 kb on + strand, within GFF2697at 380.126 kb on - strand, within GFF2697at 380.126 kb on - strand, within GFF2697at 380.126 kb on - strand, within GFF2697at 380.126 kb on - strand, within GFF2697at 380.155 kb on + strand, within GFF2697at 380.156 kb on - strand, within GFF2697at 380.156 kb on - strand, within GFF2697at 380.198 kb on + strand, within GFF2697at 380.198 kb on + strand, within GFF2697at 380.198 kb on + strand, within GFF2697at 380.198 kb on + strand, within GFF2697at 380.198 kb on + strand, within GFF2697at 380.199 kb on - strand, within GFF2697at 380.199 kb on - strand, within GFF2697at 380.199 kb on - strand, within GFF2697at 380.199 kb on - strand, within GFF2697at 380.247 kb on + strandat 380.339 kb on + strandat 380.339 kb on + strandat 380.340 kb on - strandat 380.340 kb on - strandat 380.340 kb on - strandat 380.371 kb on + strandat 380.371 kb on + strandat 380.371 kb on + strandat 380.371 kb on + strandat 380.371 kb on + strandat 380.371 kb on + strandat 380.372 kb on - strandat 380.372 kb on - strandat 380.372 kb on - strandat 380.406 kb on - strandat 380.406 kb on - strandat 380.406 kb on - strandat 380.552 kb on + strandat 380.552 kb on + strandat 380.553 kb on - strandat 380.553 kb on - strandat 380.716 kb on + strand, within GFF2698at 380.716 kb on + strand, within GFF2698at 380.716 kb on + strand, within GFF2698at 380.717 kb on - strand, within GFF2698at 380.717 kb on - strand, within GFF2698at 380.717 kb on - strand, within GFF2698at 380.768 kb on + strand, within GFF2698at 380.768 kb on + strand, within GFF2698at 380.769 kb on - strand, within GFF2698at 380.860 kb on + strand, within GFF2698at 380.860 kb on + strand, within GFF2698at 380.861 kb on - strand, within GFF2698at 380.861 kb on - strand, within GFF2698at 380.861 kb on - strand, within GFF2698at 380.861 kb on - strand, within GFF2698at 380.861 kb on - strand, within GFF2698at 381.195 kb on + strand, within GFF2698at 381.195 kb on + strand, within GFF2698at 381.196 kb on - strand, within GFF2698at 381.196 kb on - strand, within GFF2698at 381.196 kb on - strand, within GFF2698at 381.196 kb on - strand, within GFF2698at 381.331 kb on + strand, within GFF2698at 381.332 kb on - strand, within GFF2698

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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377,910 + GFF2696 0.26 -1.0
377,911 - GFF2696 0.27 -1.1
377,911 - GFF2696 0.27 -0.1
377,911 - GFF2696 0.27 -0.0
377,911 - GFF2696 0.27 -0.1
377,911 - GFF2696 0.27 +0.4
378,092 + GFF2696 0.51 -0.5
378,092 + GFF2696 0.51 +0.5
378,178 - GFF2696 0.62 +0.1
378,178 - GFF2696 0.62 -0.2
378,313 + GFF2696 0.80 -0.8
378,313 + GFF2696 0.80 -0.3
378,313 + GFF2696 0.80 -0.2
378,313 + GFF2696 0.80 -0.9
378,313 + GFF2696 0.80 -0.1
378,313 + GFF2696 0.80 -0.6
378,314 - GFF2696 0.80 -0.8
378,331 + GFF2696 0.83 -0.5
378,331 + GFF2696 0.83 -0.9
378,331 + GFF2696 0.83 -0.2
378,331 + GFF2696 0.83 +0.1
378,331 + GFF2696 0.83 -1.2
378,331 + GFF2696 0.83 +0.2
378,332 - GFF2696 0.83 -0.7
378,332 - GFF2696 0.83 +0.3
378,358 - GFF2696 0.86 -1.5
378,590 + -0.0
378,590 + +0.2
378,750 + -0.9
378,876 + -0.8
378,876 + -0.0
378,876 + +0.4
378,876 + +1.6
378,876 + -0.7
378,876 + -0.2
378,877 - +0.1
378,877 - +0.1
378,877 - -0.7
378,880 + -0.0
378,880 + -1.2
378,881 - +0.1
378,881 - -0.2
378,881 - +1.6
378,881 - -0.2
378,881 - -0.2
378,881 - +0.1
378,881 - +0.6
378,881 - -0.3
378,881 - +0.7
378,881 - -0.5
378,881 - +0.3
378,995 + +0.2
378,995 + -0.4
378,995 + +0.2
378,995 + -0.8
378,995 + -1.1
378,995 + -0.3
378,996 - -0.2
379,045 + GFF2697 0.13 +0.2
379,045 + GFF2697 0.13 -0.3
379,045 + GFF2697 0.13 +2.2
379,045 + GFF2697 0.13 +0.1
379,046 - GFF2697 0.13 -1.7
379,046 - GFF2697 0.13 -0.3
379,046 - GFF2697 0.13 +0.3
379,046 - GFF2697 0.13 +0.5
379,046 - GFF2697 0.13 +0.2
379,046 - GFF2697 0.13 -0.8
379,046 - GFF2697 0.13 -0.3
379,120 - GFF2697 0.18 -0.5
379,120 - GFF2697 0.18 -1.3
379,186 + GFF2697 0.22 +0.1
379,186 + GFF2697 0.22 +0.1
379,186 + GFF2697 0.22 -0.2
379,186 + GFF2697 0.22 -0.4
379,187 - GFF2697 0.22 +0.6
379,205 + GFF2697 0.23 +0.5
379,205 + GFF2697 0.23 +0.7
379,205 + GFF2697 0.23 +0.1
379,205 + GFF2697 0.23 -0.1
379,205 + GFF2697 0.23 +1.0
379,205 + GFF2697 0.23 -0.8
379,205 + GFF2697 0.23 +0.6
379,205 + GFF2697 0.23 -0.4
379,205 + GFF2697 0.23 +0.3
379,205 + GFF2697 0.23 +0.3
379,205 + GFF2697 0.23 +1.4
379,205 + GFF2697 0.23 -0.4
379,206 - GFF2697 0.23 -0.1
379,206 - GFF2697 0.23 -0.2
379,206 - GFF2697 0.23 +0.9
379,206 - GFF2697 0.23 +0.2
379,206 - GFF2697 0.23 +0.6
379,206 - GFF2697 0.23 +0.6
379,206 - GFF2697 0.23 -0.6
379,226 + GFF2697 0.25 +0.9
379,328 + GFF2697 0.31 +0.6
379,328 + GFF2697 0.31 +0.5
379,328 + GFF2697 0.31 +0.6
379,328 + GFF2697 0.31 -0.1
379,329 - GFF2697 0.31 -0.1
379,329 - GFF2697 0.31 +1.1
379,329 - GFF2697 0.31 +0.1
379,345 + GFF2697 0.32 -0.3
379,345 + GFF2697 0.32 -0.2
379,346 - GFF2697 0.33 -0.2
379,346 - GFF2697 0.33 +0.0
379,465 + GFF2697 0.40 -0.8
379,465 + GFF2697 0.40 +0.6
379,466 - GFF2697 0.40 +0.9
379,466 - GFF2697 0.40 -1.4
379,466 - GFF2697 0.40 +0.2
379,466 - GFF2697 0.40 +0.2
379,680 + GFF2697 0.54 -0.4
379,680 + GFF2697 0.54 -1.9
379,681 - GFF2697 0.55 -0.0
379,681 - GFF2697 0.55 +0.1
379,681 - GFF2697 0.55 +0.2
379,710 + GFF2697 0.56 -0.6
379,710 + GFF2697 0.56 -0.3
379,710 + GFF2697 0.56 -0.2
379,711 - GFF2697 0.56 +0.6
379,711 - GFF2697 0.56 -0.8
379,711 - GFF2697 0.56 -0.7
379,711 - GFF2697 0.56 +0.3
379,718 + GFF2697 0.57 -0.2
379,718 + GFF2697 0.57 +0.2
379,718 + GFF2697 0.57 +0.0
379,718 + GFF2697 0.57 -0.1
379,719 - GFF2697 0.57 -0.4
379,719 - GFF2697 0.57 +0.4
379,719 - GFF2697 0.57 -0.3
379,859 + GFF2697 0.66 -0.0
379,859 + GFF2697 0.66 -1.0
379,859 + GFF2697 0.66 -1.1
379,860 - GFF2697 0.66 +0.6
379,866 + GFF2697 0.67 -0.1
379,866 + GFF2697 0.67 +0.3
379,866 + GFF2697 0.67 +0.7
380,019 + GFF2697 0.77 +0.6
380,019 + GFF2697 0.77 -0.2
380,020 - GFF2697 0.77 -0.2
380,020 - GFF2697 0.77 +0.5
380,038 + GFF2697 0.78 -0.1
380,038 + GFF2697 0.78 -0.8
380,039 - GFF2697 0.78 +0.3
380,039 - GFF2697 0.78 -0.2
380,125 + GFF2697 0.84 +0.5
380,125 + GFF2697 0.84 +0.8
380,125 + GFF2697 0.84 -0.3
380,126 - GFF2697 0.84 +0.1
380,126 - GFF2697 0.84 -0.0
380,126 - GFF2697 0.84 +0.1
380,126 - GFF2697 0.84 +0.2
380,155 + GFF2697 0.86 -0.5
380,156 - GFF2697 0.86 +0.1
380,156 - GFF2697 0.86 -0.4
380,198 + GFF2697 0.88 +0.2
380,198 + GFF2697 0.88 +0.4
380,198 + GFF2697 0.88 -0.4
380,198 + GFF2697 0.88 -0.3
380,198 + GFF2697 0.88 +0.8
380,199 - GFF2697 0.89 -1.1
380,199 - GFF2697 0.89 -0.2
380,199 - GFF2697 0.89 -0.5
380,199 - GFF2697 0.89 +0.9
380,247 + +0.3
380,339 + -1.4
380,339 + -0.8
380,340 - -0.2
380,340 - +0.3
380,340 - +0.5
380,371 + -0.1
380,371 + +0.3
380,371 + -0.3
380,371 + -0.4
380,371 + +0.6
380,371 + +0.1
380,372 - +0.3
380,372 - +0.2
380,372 - +0.4
380,406 - +0.2
380,406 - -1.6
380,406 - +0.2
380,552 + +1.2
380,552 + +0.4
380,553 - -0.1
380,553 - +0.2
380,716 + GFF2698 0.17 +0.6
380,716 + GFF2698 0.17 +0.2
380,716 + GFF2698 0.17 -0.4
380,717 - GFF2698 0.17 -0.3
380,717 - GFF2698 0.17 +0.2
380,717 - GFF2698 0.17 -0.3
380,768 + GFF2698 0.20 -0.0
380,768 + GFF2698 0.20 +1.2
380,769 - GFF2698 0.20 -0.7
380,860 + GFF2698 0.24 -1.0
380,860 + GFF2698 0.24 -0.4
380,861 - GFF2698 0.24 -0.4
380,861 - GFF2698 0.24 +0.1
380,861 - GFF2698 0.24 +0.4
380,861 - GFF2698 0.24 -0.4
380,861 - GFF2698 0.24 -0.2
381,195 + GFF2698 0.40 -0.3
381,195 + GFF2698 0.40 -1.1
381,196 - GFF2698 0.41 +1.2
381,196 - GFF2698 0.41 +0.2
381,196 - GFF2698 0.41 +0.0
381,196 - GFF2698 0.41 +0.7
381,331 + GFF2698 0.47 +0.8
381,332 - GFF2698 0.47 -0.0

Or see this region's nucleotide sequence