Strain Fitness in Xanthobacter sp. DMC5 around GFF2689

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2688 and GFF2689 are separated by 115 nucleotidesGFF2689 and GFF2690 are separated by 266 nucleotides GFF2688 - hypothetical protein, at 372,653 to 373,720 GFF2688 GFF2689 - hypothetical protein, at 373,836 to 374,132 GFF2689 GFF2690 - hypothetical protein, at 374,399 to 375,190 GFF2690 Position (kb) 373 374 375Strain fitness (log2 ratio) -2 -1 0 1 2at 372.976 kb on - strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.068 kb on + strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.069 kb on - strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.111 kb on + strand, within GFF2688at 373.112 kb on - strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.257 kb on + strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.258 kb on - strand, within GFF2688at 373.415 kb on - strand, within GFF2688at 373.450 kb on - strand, within GFF2688at 373.545 kb on - strand, within GFF2688at 373.567 kb on + strand, within GFF2688at 373.611 kb on + strand, within GFF2688at 373.750 kb on + strandat 373.857 kb on - strandat 374.033 kb on + strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.034 kb on - strand, within GFF2689at 374.307 kb on + strandat 374.307 kb on + strandat 374.307 kb on + strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.308 kb on - strandat 374.318 kb on - strandat 374.455 kb on - strandat 374.490 kb on - strand, within GFF2690at 374.490 kb on - strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.491 kb on + strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.492 kb on - strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.753 kb on + strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.754 kb on - strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.760 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.858 kb on + strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.859 kb on - strand, within GFF2690at 374.986 kb on + strand, within GFF2690at 374.987 kb on - strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.084 kb on + strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.085 kb on - strand, within GFF2690at 375.100 kb on + strand, within GFF2690

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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372,976 - GFF2688 0.30 -0.4
373,068 + GFF2688 0.39 +0.1
373,068 + GFF2688 0.39 +0.2
373,068 + GFF2688 0.39 +2.2
373,069 - GFF2688 0.39 -1.3
373,069 - GFF2688 0.39 +0.6
373,069 - GFF2688 0.39 -1.6
373,069 - GFF2688 0.39 +0.2
373,111 + GFF2688 0.43 -0.4
373,111 + GFF2688 0.43 -0.0
373,112 - GFF2688 0.43 -0.1
373,257 + GFF2688 0.57 +0.3
373,257 + GFF2688 0.57 +1.6
373,257 + GFF2688 0.57 -0.4
373,257 + GFF2688 0.57 -0.2
373,258 - GFF2688 0.57 -0.2
373,258 - GFF2688 0.57 -1.1
373,415 - GFF2688 0.71 -0.5
373,450 - GFF2688 0.75 -0.1
373,545 - GFF2688 0.84 +0.7
373,567 + GFF2688 0.86 -0.7
373,611 + GFF2688 0.90 +0.4
373,750 + -0.6
373,857 - -1.2
374,033 + GFF2689 0.66 -0.8
374,034 - GFF2689 0.67 +1.6
374,034 - GFF2689 0.67 -0.0
374,307 + +0.5
374,307 + -0.2
374,307 + -0.4
374,308 - -0.4
374,308 - -0.4
374,308 - +0.5
374,308 - +0.6
374,308 - -0.1
374,308 - +0.1
374,308 - -2.4
374,308 - -0.1
374,318 - -0.9
374,455 - -0.4
374,490 - GFF2690 0.11 -0.1
374,490 - GFF2690 0.11 +0.1
374,491 + GFF2690 0.12 -0.1
374,491 + GFF2690 0.12 +0.0
374,491 + GFF2690 0.12 -1.5
374,491 + GFF2690 0.12 +0.6
374,491 + GFF2690 0.12 +0.5
374,491 + GFF2690 0.12 -0.2
374,492 - GFF2690 0.12 +0.2
374,492 - GFF2690 0.12 +0.5
374,492 - GFF2690 0.12 +0.7
374,492 - GFF2690 0.12 -0.0
374,753 + GFF2690 0.45 +0.2
374,753 + GFF2690 0.45 +0.5
374,753 + GFF2690 0.45 +0.4
374,753 + GFF2690 0.45 -0.6
374,753 + GFF2690 0.45 -0.7
374,753 + GFF2690 0.45 -0.2
374,754 - GFF2690 0.45 +0.0
374,754 - GFF2690 0.45 -0.4
374,760 + GFF2690 0.46 +0.3
374,760 + GFF2690 0.46 -0.2
374,858 + GFF2690 0.58 +0.2
374,858 + GFF2690 0.58 +0.9
374,859 - GFF2690 0.58 -0.1
374,859 - GFF2690 0.58 +0.1
374,859 - GFF2690 0.58 -0.3
374,986 + GFF2690 0.74 -0.0
374,987 - GFF2690 0.74 -0.8
375,084 + GFF2690 0.86 +0.1
375,084 + GFF2690 0.86 -0.8
375,084 + GFF2690 0.86 -0.3
375,084 + GFF2690 0.86 -0.7
375,084 + GFF2690 0.86 -0.4
375,084 + GFF2690 0.86 +0.2
375,085 - GFF2690 0.87 +0.2
375,085 - GFF2690 0.87 +0.6
375,085 - GFF2690 0.87 +0.4
375,100 + GFF2690 0.89 -0.5

Or see this region's nucleotide sequence