Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2665 and GFF2666 are separated by 6 nucleotides GFF2666 and GFF2667 overlap by 4 nucleotides GFF2667 and GFF2668 are separated by 404 nucleotides
GFF2665 - Gluconate 2-dehydrogenase flavoprotein, at 349,336 to 350,853
GFF2665
GFF2666 - Gluconate 2-dehydrogenase flavoprotein, at 350,860 to 351,102
GFF2666
GFF2667 - Gluconate 2-dehydrogenase cytochrome c subunit, at 351,099 to 352,325
GFF2667
GFF2668 - putative zinc-binding alcohol dehydrogenase, at 352,730 to 353,899
GFF2668
Position (kb) 351
352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 350.125 kb on - strand, within GFF2665 at 350.223 kb on + strand, within GFF2665 at 350.223 kb on + strand, within GFF2665 at 350.223 kb on + strand, within GFF2665 at 350.223 kb on + strand, within GFF2665 at 350.224 kb on - strand, within GFF2665 at 350.224 kb on - strand, within GFF2665 at 350.224 kb on - strand, within GFF2665 at 350.224 kb on - strand, within GFF2665 at 350.326 kb on + strand, within GFF2665 at 350.326 kb on + strand, within GFF2665 at 350.326 kb on + strand, within GFF2665 at 350.327 kb on - strand, within GFF2665 at 350.327 kb on - strand, within GFF2665 at 350.327 kb on - strand, within GFF2665 at 350.327 kb on - strand, within GFF2665 at 350.366 kb on - strand, within GFF2665 at 350.366 kb on - strand, within GFF2665 at 350.366 kb on - strand, within GFF2665 at 350.366 kb on - strand, within GFF2665 at 350.620 kb on + strand, within GFF2665 at 350.620 kb on + strand, within GFF2665 at 350.620 kb on + strand, within GFF2665 at 350.620 kb on + strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.621 kb on - strand, within GFF2665 at 350.659 kb on + strand, within GFF2665 at 350.660 kb on - strand, within GFF2665 at 350.660 kb on - strand, within GFF2665 at 350.677 kb on + strand, within GFF2665 at 350.677 kb on + strand, within GFF2665 at 350.677 kb on + strand, within GFF2665 at 350.678 kb on - strand, within GFF2665 at 350.678 kb on - strand, within GFF2665 at 350.698 kb on + strand, within GFF2665 at 350.698 kb on + strand, within GFF2665 at 350.699 kb on - strand, within GFF2665 at 350.699 kb on - strand, within GFF2665 at 350.699 kb on - strand, within GFF2665 at 350.773 kb on + strand at 350.773 kb on + strand at 350.774 kb on - strand at 350.774 kb on - strand at 350.774 kb on - strand at 350.774 kb on - strand at 350.774 kb on - strand at 350.828 kb on + strand at 350.828 kb on + strand at 350.828 kb on + strand at 350.829 kb on - strand at 350.829 kb on - strand at 350.829 kb on - strand at 350.851 kb on + strand at 350.851 kb on + strand at 350.852 kb on - strand at 350.852 kb on - strand at 350.866 kb on + strand at 350.867 kb on - strand at 350.867 kb on - strand at 350.935 kb on + strand, within GFF2666 at 350.936 kb on - strand, within GFF2666 at 351.004 kb on + strand, within GFF2666 at 351.005 kb on - strand, within GFF2666 at 351.005 kb on - strand, within GFF2666 at 351.005 kb on - strand, within GFF2666 at 351.037 kb on + strand, within GFF2666 at 351.037 kb on + strand, within GFF2666 at 351.038 kb on - strand, within GFF2666 at 351.038 kb on - strand, within GFF2666 at 351.038 kb on - strand, within GFF2666 at 351.067 kb on + strand, within GFF2666 at 351.067 kb on + strand, within GFF2666 at 351.067 kb on + strand, within GFF2666 at 351.067 kb on + strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.068 kb on - strand, within GFF2666 at 351.195 kb on + strand at 351.196 kb on - strand at 351.196 kb on - strand at 351.206 kb on - strand at 351.206 kb on - strand at 351.206 kb on - strand at 351.394 kb on - strand, within GFF2667 at 351.427 kb on - strand, within GFF2667 at 351.427 kb on - strand, within GFF2667 at 351.427 kb on - strand, within GFF2667 at 351.427 kb on - strand, within GFF2667 at 351.427 kb on - strand, within GFF2667 at 351.469 kb on - strand, within GFF2667 at 351.469 kb on - strand, within GFF2667 at 351.585 kb on + strand, within GFF2667 at 351.586 kb on - strand, within GFF2667 at 351.586 kb on - strand, within GFF2667 at 351.586 kb on - strand, within GFF2667 at 351.586 kb on - strand, within GFF2667 at 351.630 kb on + strand, within GFF2667 at 351.631 kb on - strand, within GFF2667 at 351.631 kb on - strand, within GFF2667 at 351.752 kb on + strand, within GFF2667 at 351.752 kb on + strand, within GFF2667 at 351.753 kb on - strand, within GFF2667 at 351.753 kb on - strand, within GFF2667 at 351.808 kb on - strand, within GFF2667 at 351.831 kb on + strand, within GFF2667 at 351.894 kb on - strand, within GFF2667 at 351.918 kb on + strand, within GFF2667 at 351.918 kb on + strand, within GFF2667 at 351.918 kb on + strand, within GFF2667 at 351.918 kb on + strand, within GFF2667 at 351.919 kb on - strand, within GFF2667 at 351.919 kb on - strand, within GFF2667 at 351.919 kb on - strand, within GFF2667 at 351.964 kb on + strand, within GFF2667 at 351.964 kb on + strand, within GFF2667 at 351.964 kb on + strand, within GFF2667 at 351.965 kb on - strand, within GFF2667 at 351.965 kb on - strand, within GFF2667 at 351.965 kb on - strand, within GFF2667 at 351.965 kb on - strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.005 kb on + strand, within GFF2667 at 352.006 kb on - strand, within GFF2667 at 352.006 kb on - strand, within GFF2667 at 352.006 kb on - strand, within GFF2667 at 352.006 kb on - strand, within GFF2667 at 352.092 kb on + strand, within GFF2667 at 352.106 kb on + strand, within GFF2667 at 352.106 kb on + strand, within GFF2667 at 352.106 kb on + strand, within GFF2667 at 352.106 kb on + strand, within GFF2667 at 352.107 kb on - strand, within GFF2667 at 352.107 kb on - strand, within GFF2667 at 352.107 kb on - strand, within GFF2667 at 352.107 kb on - strand, within GFF2667 at 352.136 kb on + strand, within GFF2667 at 352.233 kb on + strand at 352.233 kb on + strand at 352.233 kb on + strand at 352.233 kb on + strand at 352.233 kb on + strand at 352.233 kb on + strand at 352.233 kb on + strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.234 kb on - strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.323 kb on + strand at 352.324 kb on - strand at 352.324 kb on - strand at 352.324 kb on - strand at 352.324 kb on - strand at 352.324 kb on - strand at 352.324 kb on - strand at 352.353 kb on + strand at 352.353 kb on + strand at 352.353 kb on + strand at 352.353 kb on + strand at 352.353 kb on + strand at 352.354 kb on - strand at 352.354 kb on - strand at 352.354 kb on - strand at 352.354 kb on - strand at 352.517 kb on + strand at 352.548 kb on + strand at 352.548 kb on + strand at 352.549 kb on - strand at 352.549 kb on - strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.556 kb on + strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.557 kb on - strand at 352.561 kb on + strand at 352.562 kb on - strand at 352.597 kb on + strand at 352.597 kb on + strand at 352.602 kb on - strand at 352.602 kb on - strand at 352.602 kb on - strand at 352.602 kb on - strand at 352.602 kb on - strand at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.862 kb on + strand, within GFF2668 at 352.863 kb on - strand, within GFF2668 at 352.863 kb on - strand, within GFF2668 at 352.863 kb on - strand, within GFF2668 at 352.863 kb on - strand, within GFF2668 at 352.863 kb on - strand, within GFF2668 at 353.030 kb on + strand, within GFF2668 at 353.030 kb on + strand, within GFF2668 at 353.030 kb on + strand, within GFF2668 at 353.030 kb on + strand, within GFF2668 at 353.031 kb on - strand, within GFF2668 at 353.031 kb on - strand, within GFF2668 at 353.031 kb on - strand, within GFF2668 at 353.087 kb on + strand, within GFF2668 at 353.111 kb on + strand, within GFF2668 at 353.132 kb on + strand, within GFF2668 at 353.133 kb on - strand, within GFF2668 at 353.153 kb on + strand, within GFF2668 at 353.154 kb on - strand, within GFF2668 at 353.154 kb on - strand, within GFF2668 at 353.154 kb on - strand, within GFF2668 at 353.168 kb on + strand, within GFF2668 at 353.169 kb on - strand, within GFF2668 at 353.253 kb on - strand, within GFF2668 at 353.278 kb on - strand, within GFF2668 at 353.278 kb on - strand, within GFF2668 at 353.278 kb on - strand, within GFF2668 at 353.278 kb on - strand, within GFF2668
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 350,125 - GFF2665 0.52 -0.8 350,223 + GFF2665 0.58 -0.3 350,223 + GFF2665 0.58 +0.8 350,223 + GFF2665 0.58 -0.4 350,223 + GFF2665 0.58 -0.1 350,224 - GFF2665 0.58 -1.0 350,224 - GFF2665 0.58 +0.7 350,224 - GFF2665 0.58 +0.5 350,224 - GFF2665 0.58 +0.7 350,326 + GFF2665 0.65 +0.5 350,326 + GFF2665 0.65 -0.2 350,326 + GFF2665 0.65 -0.8 350,327 - GFF2665 0.65 -0.2 350,327 - GFF2665 0.65 -0.8 350,327 - GFF2665 0.65 +0.5 350,327 - GFF2665 0.65 +0.2 350,366 - GFF2665 0.68 +0.4 350,366 - GFF2665 0.68 -0.6 350,366 - GFF2665 0.68 -0.1 350,366 - GFF2665 0.68 -0.2 350,620 + GFF2665 0.85 -0.4 350,620 + GFF2665 0.85 -0.3 350,620 + GFF2665 0.85 -0.4 350,620 + GFF2665 0.85 -1.2 350,621 - GFF2665 0.85 +0.7 350,621 - GFF2665 0.85 +0.1 350,621 - GFF2665 0.85 +1.2 350,621 - GFF2665 0.85 -0.1 350,621 - GFF2665 0.85 +0.1 350,621 - GFF2665 0.85 +0.6 350,659 + GFF2665 0.87 +0.0 350,660 - GFF2665 0.87 +0.2 350,660 - GFF2665 0.87 -0.8 350,677 + GFF2665 0.88 -0.2 350,677 + GFF2665 0.88 +1.2 350,677 + GFF2665 0.88 +0.4 350,678 - GFF2665 0.88 +1.3 350,678 - GFF2665 0.88 -1.9 350,698 + GFF2665 0.90 +0.6 350,698 + GFF2665 0.90 -0.5 350,699 - GFF2665 0.90 -0.0 350,699 - GFF2665 0.90 +0.1 350,699 - GFF2665 0.90 +0.6 350,773 + -0.9 350,773 + +0.5 350,774 - -1.3 350,774 - -1.1 350,774 - -0.9 350,774 - +0.2 350,774 - -0.1 350,828 + +0.1 350,828 + +0.1 350,828 + +0.9 350,829 - -0.8 350,829 - -0.7 350,829 - -0.1 350,851 + +0.1 350,851 + +1.3 350,852 - -0.5 350,852 - +0.8 350,866 + -0.0 350,867 - -1.6 350,867 - -0.2 350,935 + GFF2666 0.31 +1.6 350,936 - GFF2666 0.31 -0.0 351,004 + GFF2666 0.59 -0.8 351,005 - GFF2666 0.60 -0.0 351,005 - GFF2666 0.60 +0.3 351,005 - GFF2666 0.60 +0.2 351,037 + GFF2666 0.73 -0.6 351,037 + GFF2666 0.73 +1.6 351,038 - GFF2666 0.73 -0.5 351,038 - GFF2666 0.73 +1.0 351,038 - GFF2666 0.73 -1.2 351,067 + GFF2666 0.85 -1.2 351,067 + GFF2666 0.85 -0.2 351,067 + GFF2666 0.85 +1.4 351,067 + GFF2666 0.85 +0.7 351,068 - GFF2666 0.86 -0.5 351,068 - GFF2666 0.86 +0.3 351,068 - GFF2666 0.86 -0.3 351,068 - GFF2666 0.86 +0.6 351,068 - GFF2666 0.86 -1.0 351,068 - GFF2666 0.86 +0.0 351,068 - GFF2666 0.86 -0.5 351,068 - GFF2666 0.86 -0.3 351,195 + -0.3 351,196 - +0.6 351,196 - -0.6 351,206 - +0.4 351,206 - -0.5 351,206 - +0.5 351,394 - GFF2667 0.24 +1.1 351,427 - GFF2667 0.27 +0.4 351,427 - GFF2667 0.27 +0.6 351,427 - GFF2667 0.27 +0.3 351,427 - GFF2667 0.27 +0.4 351,427 - GFF2667 0.27 -0.0 351,469 - GFF2667 0.30 -0.2 351,469 - GFF2667 0.30 +0.0 351,585 + GFF2667 0.40 +1.0 351,586 - GFF2667 0.40 -0.4 351,586 - GFF2667 0.40 -0.4 351,586 - GFF2667 0.40 +0.3 351,586 - GFF2667 0.40 +0.1 351,630 + GFF2667 0.43 -0.8 351,631 - GFF2667 0.43 +0.8 351,631 - GFF2667 0.43 -0.6 351,752 + GFF2667 0.53 +0.6 351,752 + GFF2667 0.53 -1.4 351,753 - GFF2667 0.53 +0.1 351,753 - GFF2667 0.53 +0.2 351,808 - GFF2667 0.58 +0.1 351,831 + GFF2667 0.60 +0.0 351,894 - GFF2667 0.65 -0.2 351,918 + GFF2667 0.67 -0.7 351,918 + GFF2667 0.67 +1.1 351,918 + GFF2667 0.67 -0.9 351,918 + GFF2667 0.67 +0.2 351,919 - GFF2667 0.67 -0.0 351,919 - GFF2667 0.67 -0.8 351,919 - GFF2667 0.67 -1.3 351,964 + GFF2667 0.70 -0.0 351,964 + GFF2667 0.70 -0.0 351,964 + GFF2667 0.70 -0.9 351,965 - GFF2667 0.71 -0.3 351,965 - GFF2667 0.71 -1.5 351,965 - GFF2667 0.71 +0.1 351,965 - GFF2667 0.71 -0.3 352,005 + GFF2667 0.74 +0.5 352,005 + GFF2667 0.74 -1.1 352,005 + GFF2667 0.74 +0.1 352,005 + GFF2667 0.74 -0.6 352,005 + GFF2667 0.74 +0.3 352,005 + GFF2667 0.74 +1.2 352,006 - GFF2667 0.74 -0.3 352,006 - GFF2667 0.74 +0.9 352,006 - GFF2667 0.74 -0.7 352,006 - GFF2667 0.74 -0.1 352,092 + GFF2667 0.81 -0.1 352,106 + GFF2667 0.82 -0.3 352,106 + GFF2667 0.82 -0.2 352,106 + GFF2667 0.82 -0.3 352,106 + GFF2667 0.82 -0.2 352,107 - GFF2667 0.82 -0.4 352,107 - GFF2667 0.82 -0.8 352,107 - GFF2667 0.82 -0.2 352,107 - GFF2667 0.82 +0.1 352,136 + GFF2667 0.85 -0.1 352,233 + +0.2 352,233 + -0.6 352,233 + +1.2 352,233 + +0.0 352,233 + +0.4 352,233 + +1.1 352,233 + -0.6 352,234 - +0.7 352,234 - -0.0 352,234 - +0.8 352,234 - +0.3 352,234 - -0.6 352,234 - +0.2 352,234 - +0.2 352,234 - -1.0 352,234 - -3.2 352,234 - -2.0 352,234 - +0.2 352,323 + +1.1 352,323 + +0.2 352,323 + -0.8 352,323 + +0.5 352,323 + -0.4 352,323 + -0.3 352,323 + -1.4 352,323 + +0.9 352,323 + -0.6 352,324 - +0.4 352,324 - +1.4 352,324 - -0.9 352,324 - +0.3 352,324 - +1.6 352,324 - -1.3 352,353 + -0.3 352,353 + +0.5 352,353 + +0.4 352,353 + +0.3 352,353 + +0.5 352,354 - +1.9 352,354 - +0.1 352,354 - -0.4 352,354 - +0.3 352,517 + -0.6 352,548 + -0.2 352,548 + -0.3 352,549 - +0.3 352,549 - +0.7 352,556 + +0.1 352,556 + +1.1 352,556 + +0.0 352,556 + -0.6 352,556 + -0.1 352,556 + +0.6 352,556 + +0.2 352,556 + -0.1 352,557 - +1.2 352,557 - -1.8 352,557 - +0.3 352,557 - -0.3 352,557 - -0.2 352,557 - -0.0 352,557 - -1.0 352,557 - +0.4 352,557 - -0.0 352,561 + +0.2 352,562 - -1.0 352,597 + +1.7 352,597 + -1.2 352,602 - -0.7 352,602 - -0.5 352,602 - -0.2 352,602 - +0.7 352,602 - +1.0 352,862 + GFF2668 0.11 -0.1 352,862 + GFF2668 0.11 -0.1 352,862 + GFF2668 0.11 -0.1 352,862 + GFF2668 0.11 +0.6 352,862 + GFF2668 0.11 -1.0 352,862 + GFF2668 0.11 -0.2 352,862 + GFF2668 0.11 -0.7 352,863 - GFF2668 0.11 +0.3 352,863 - GFF2668 0.11 -1.1 352,863 - GFF2668 0.11 +0.5 352,863 - GFF2668 0.11 +0.5 352,863 - GFF2668 0.11 +0.3 353,030 + GFF2668 0.26 -1.0 353,030 + GFF2668 0.26 +0.0 353,030 + GFF2668 0.26 -1.1 353,030 + GFF2668 0.26 -0.8 353,031 - GFF2668 0.26 -0.4 353,031 - GFF2668 0.26 +0.3 353,031 - GFF2668 0.26 +0.5 353,087 + GFF2668 0.31 +0.3 353,111 + GFF2668 0.33 +0.3 353,132 + GFF2668 0.34 +0.1 353,133 - GFF2668 0.34 +1.1 353,153 + GFF2668 0.36 +0.6 353,154 - GFF2668 0.36 -0.3 353,154 - GFF2668 0.36 +1.2 353,154 - GFF2668 0.36 -0.7 353,168 + GFF2668 0.37 -0.7 353,169 - GFF2668 0.38 +0.8 353,253 - GFF2668 0.45 -0.2 353,278 - GFF2668 0.47 -0.9 353,278 - GFF2668 0.47 -0.5 353,278 - GFF2668 0.47 +0.2 353,278 - GFF2668 0.47 +0.2
Or see this region's nucleotide sequence