Strain Fitness in Xanthobacter sp. DMC5 around GFF2664

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2662 and GFF2663 overlap by 1 nucleotidesGFF2663 and GFF2664 are separated by 156 nucleotidesGFF2664 and GFF2665 are separated by 4 nucleotides GFF2662 - hypothetical protein, at 346,669 to 347,958 GFF2662 GFF2663 - hypothetical protein, at 347,958 to 348,428 GFF2663 GFF2664 - hypothetical protein, at 348,585 to 349,331 GFF2664 GFF2665 - Gluconate 2-dehydrogenase flavoprotein, at 349,336 to 350,853 GFF2665 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 347.594 kb on + strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.595 kb on - strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.596 kb on + strand, within GFF2662at 347.597 kb on + strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.597 kb on - strand, within GFF2662at 347.674 kb on + strand, within GFF2662at 347.675 kb on - strand, within GFF2662at 347.681 kb on + strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.682 kb on - strand, within GFF2662at 347.771 kb on + strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.772 kb on - strand, within GFF2662at 347.775 kb on + strand, within GFF2662at 347.775 kb on + strand, within GFF2662at 347.776 kb on - strand, within GFF2662at 347.834 kb on + strandat 347.836 kb on + strandat 347.837 kb on - strandat 347.965 kb on - strandat 347.965 kb on - strandat 347.966 kb on + strandat 347.966 kb on + strandat 347.966 kb on + strandat 347.967 kb on - strandat 347.967 kb on - strandat 347.976 kb on - strandat 347.979 kb on + strandat 347.979 kb on + strandat 347.980 kb on - strandat 347.980 kb on - strandat 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.038 kb on + strand, within GFF2663at 348.039 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.181 kb on - strand, within GFF2663at 348.215 kb on + strand, within GFF2663at 348.216 kb on - strand, within GFF2663at 348.216 kb on - strand, within GFF2663at 348.222 kb on + strand, within GFF2663at 348.223 kb on - strand, within GFF2663at 348.223 kb on - strand, within GFF2663at 348.328 kb on - strand, within GFF2663at 348.426 kb on + strandat 348.427 kb on - strandat 348.497 kb on + strandat 348.497 kb on + strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.498 kb on - strandat 348.543 kb on + strandat 348.543 kb on + strandat 348.544 kb on - strandat 348.544 kb on - strandat 348.753 kb on + strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.754 kb on - strand, within GFF2664at 348.885 kb on + strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.886 kb on - strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.906 kb on + strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 348.907 kb on - strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.008 kb on + strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.009 kb on - strand, within GFF2664at 349.179 kb on + strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.180 kb on - strand, within GFF2664at 349.236 kb on + strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.237 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.252 kb on - strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.253 kb on + strand, within GFF2664at 349.254 kb on - strand, within GFF2664at 349.270 kb on - strandat 349.435 kb on - strandat 349.510 kb on + strand, within GFF2665at 349.510 kb on + strand, within GFF2665at 349.511 kb on - strand, within GFF2665at 349.551 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.662 kb on + strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.663 kb on - strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.717 kb on + strand, within GFF2665at 349.718 kb on - strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.792 kb on + strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.793 kb on - strand, within GFF2665at 349.897 kb on + strand, within GFF2665at 349.897 kb on + strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.898 kb on - strand, within GFF2665at 349.924 kb on + strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.925 kb on - strand, within GFF2665at 349.939 kb on - strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.966 kb on + strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 349.967 kb on - strand, within GFF2665at 350.008 kb on + strand, within GFF2665at 350.009 kb on - strand, within GFF2665at 350.068 kb on + strand, within GFF2665at 350.069 kb on - strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.083 kb on + strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.084 kb on - strand, within GFF2665at 350.125 kb on - strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.223 kb on + strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.224 kb on - strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.326 kb on + strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665at 350.327 kb on - strand, within GFF2665

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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347,594 + GFF2662 0.72 +1.0
347,595 - GFF2662 0.72 -0.7
347,595 - GFF2662 0.72 -0.6
347,595 - GFF2662 0.72 +0.2
347,596 + GFF2662 0.72 +0.4
347,596 + GFF2662 0.72 -1.1
347,596 + GFF2662 0.72 +0.2
347,596 + GFF2662 0.72 -1.8
347,596 + GFF2662 0.72 +0.6
347,596 + GFF2662 0.72 -0.4
347,597 + GFF2662 0.72 -0.6
347,597 - GFF2662 0.72 +0.3
347,597 - GFF2662 0.72 +0.8
347,597 - GFF2662 0.72 +0.5
347,597 - GFF2662 0.72 +1.4
347,597 - GFF2662 0.72 -0.8
347,597 - GFF2662 0.72 +0.2
347,674 + GFF2662 0.78 -1.4
347,675 - GFF2662 0.78 -1.0
347,681 + GFF2662 0.78 +0.8
347,682 - GFF2662 0.79 -1.3
347,682 - GFF2662 0.79 +0.2
347,682 - GFF2662 0.79 +0.4
347,771 + GFF2662 0.85 -0.2
347,772 - GFF2662 0.86 -1.3
347,772 - GFF2662 0.86 -0.2
347,772 - GFF2662 0.86 +0.5
347,775 + GFF2662 0.86 +0.2
347,775 + GFF2662 0.86 +0.1
347,776 - GFF2662 0.86 -0.4
347,834 + -0.2
347,836 + -0.8
347,837 - +0.5
347,965 - +0.6
347,965 - +0.2
347,966 + -0.2
347,966 + -0.4
347,966 + +0.1
347,967 - +1.0
347,967 - +0.8
347,976 - -0.9
347,979 + -0.2
347,979 + +0.6
347,980 - +0.7
347,980 - +0.5
348,038 + GFF2663 0.17 +0.8
348,038 + GFF2663 0.17 -0.2
348,038 + GFF2663 0.17 +2.4
348,038 + GFF2663 0.17 -0.0
348,038 + GFF2663 0.17 +0.5
348,038 + GFF2663 0.17 +0.5
348,039 - GFF2663 0.17 -0.1
348,181 - GFF2663 0.47 +0.4
348,181 - GFF2663 0.47 -0.3
348,181 - GFF2663 0.47 +0.2
348,215 + GFF2663 0.55 -0.1
348,216 - GFF2663 0.55 +0.9
348,216 - GFF2663 0.55 -0.2
348,222 + GFF2663 0.56 -0.1
348,223 - GFF2663 0.56 +1.2
348,223 - GFF2663 0.56 -0.6
348,328 - GFF2663 0.79 -0.4
348,426 + -0.6
348,427 - +1.6
348,497 + -1.0
348,497 + -0.4
348,498 - -0.2
348,498 - -0.5
348,498 - +0.6
348,543 + -0.3
348,543 + -0.5
348,544 - +0.1
348,544 - +0.3
348,753 + GFF2664 0.22 +1.0
348,754 - GFF2664 0.23 -1.5
348,754 - GFF2664 0.23 +0.8
348,754 - GFF2664 0.23 -0.5
348,754 - GFF2664 0.23 -0.1
348,885 + GFF2664 0.40 +1.6
348,886 - GFF2664 0.40 +0.6
348,886 - GFF2664 0.40 +0.5
348,906 + GFF2664 0.43 -0.4
348,906 + GFF2664 0.43 -1.1
348,906 + GFF2664 0.43 +0.2
348,906 + GFF2664 0.43 +0.1
348,906 + GFF2664 0.43 -0.2
348,906 + GFF2664 0.43 -0.4
348,906 + GFF2664 0.43 +0.6
348,906 + GFF2664 0.43 -0.8
348,907 - GFF2664 0.43 -0.3
348,907 - GFF2664 0.43 +0.2
348,907 - GFF2664 0.43 +0.0
348,907 - GFF2664 0.43 +0.5
348,907 - GFF2664 0.43 +0.2
348,907 - GFF2664 0.43 -0.3
348,907 - GFF2664 0.43 +0.2
348,907 - GFF2664 0.43 -0.4
348,907 - GFF2664 0.43 -0.3
348,907 - GFF2664 0.43 -0.1
348,907 - GFF2664 0.43 +0.5
349,008 + GFF2664 0.57 -0.7
349,008 + GFF2664 0.57 +0.6
349,009 - GFF2664 0.57 -0.4
349,009 - GFF2664 0.57 -0.7
349,009 - GFF2664 0.57 -0.2
349,179 + GFF2664 0.80 -1.0
349,180 - GFF2664 0.80 +0.3
349,180 - GFF2664 0.80 +0.8
349,180 - GFF2664 0.80 -0.3
349,180 - GFF2664 0.80 +1.2
349,236 + GFF2664 0.87 +0.0
349,237 - GFF2664 0.87 -0.8
349,237 - GFF2664 0.87 -2.6
349,237 - GFF2664 0.87 -0.8
349,252 - GFF2664 0.89 -0.3
349,252 - GFF2664 0.89 -0.4
349,252 - GFF2664 0.89 +0.4
349,252 - GFF2664 0.89 -0.3
349,253 + GFF2664 0.89 +0.6
349,253 + GFF2664 0.89 -0.3
349,253 + GFF2664 0.89 +0.3
349,254 - GFF2664 0.90 +0.2
349,270 - -0.2
349,435 - -0.8
349,510 + GFF2665 0.11 -0.4
349,510 + GFF2665 0.11 -1.4
349,511 - GFF2665 0.12 +0.6
349,551 + GFF2665 0.14 -0.2
349,662 + GFF2665 0.21 -1.1
349,662 + GFF2665 0.21 -0.2
349,662 + GFF2665 0.21 -1.2
349,663 - GFF2665 0.22 -0.0
349,663 - GFF2665 0.22 -1.0
349,663 - GFF2665 0.22 +1.4
349,717 + GFF2665 0.25 +1.0
349,717 + GFF2665 0.25 +0.1
349,717 + GFF2665 0.25 -0.1
349,717 + GFF2665 0.25 -0.5
349,718 - GFF2665 0.25 +0.9
349,792 + GFF2665 0.30 -2.6
349,792 + GFF2665 0.30 -0.3
349,792 + GFF2665 0.30 +0.5
349,793 - GFF2665 0.30 -1.2
349,793 - GFF2665 0.30 -1.6
349,793 - GFF2665 0.30 -0.1
349,897 + GFF2665 0.37 +0.5
349,897 + GFF2665 0.37 -0.0
349,898 - GFF2665 0.37 -1.4
349,898 - GFF2665 0.37 +0.3
349,898 - GFF2665 0.37 -0.1
349,924 + GFF2665 0.39 -0.6
349,925 - GFF2665 0.39 +1.1
349,925 - GFF2665 0.39 -0.2
349,925 - GFF2665 0.39 +0.8
349,939 - GFF2665 0.40 +0.4
349,966 + GFF2665 0.42 -0.4
349,966 + GFF2665 0.42 +0.5
349,967 - GFF2665 0.42 -0.0
349,967 - GFF2665 0.42 -0.1
349,967 - GFF2665 0.42 -2.0
350,008 + GFF2665 0.44 +1.4
350,009 - GFF2665 0.44 -0.5
350,068 + GFF2665 0.48 -1.1
350,069 - GFF2665 0.48 -0.0
350,083 + GFF2665 0.49 -0.8
350,083 + GFF2665 0.49 +0.4
350,083 + GFF2665 0.49 -0.6
350,083 + GFF2665 0.49 +0.3
350,084 - GFF2665 0.49 +0.8
350,084 - GFF2665 0.49 -0.3
350,125 - GFF2665 0.52 -0.8
350,223 + GFF2665 0.58 -0.3
350,223 + GFF2665 0.58 +0.8
350,223 + GFF2665 0.58 -0.4
350,223 + GFF2665 0.58 -0.1
350,224 - GFF2665 0.58 -1.0
350,224 - GFF2665 0.58 +0.7
350,224 - GFF2665 0.58 +0.5
350,224 - GFF2665 0.58 +0.7
350,326 + GFF2665 0.65 +0.5
350,326 + GFF2665 0.65 -0.2
350,326 + GFF2665 0.65 -0.8
350,327 - GFF2665 0.65 -0.2
350,327 - GFF2665 0.65 -0.8
350,327 - GFF2665 0.65 +0.5
350,327 - GFF2665 0.65 +0.2

Or see this region's nucleotide sequence