Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2658 and GFF2659 are separated by 96 nucleotides GFF2659 and GFF2660 are separated by 18 nucleotides GFF2660 and GFF2661 are separated by 22 nucleotides GFF2661 and GFF2662 are separated by 217 nucleotides GFF2662 and GFF2663 overlap by 1 nucleotides GFF2663 and GFF2664 are separated by 156 nucleotides
GFF2658 - hypothetical protein, at 345,263 to 345,697
GFF2658
GFF2659 - hypothetical protein, at 345,794 to 345,973
GFF2659
GFF2660 - hypothetical protein, at 345,992 to 346,204
GFF2660
GFF2661 - hypothetical protein, at 346,227 to 346,451
GFF2661
GFF2662 - hypothetical protein, at 346,669 to 347,958
GFF2662
GFF2663 - hypothetical protein, at 347,958 to 348,428
GFF2663
GFF2664 - hypothetical protein, at 348,585 to 349,331
GFF2664
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.674 kb on + strand at 345.675 kb on - strand at 345.675 kb on - strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.719 kb on + strand at 345.720 kb on - strand at 345.871 kb on + strand, within GFF2659 at 345.872 kb on - strand, within GFF2659 at 345.952 kb on - strand, within GFF2659 at 345.956 kb on + strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.957 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 345.972 kb on - strand at 346.069 kb on + strand, within GFF2660 at 346.070 kb on - strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.072 kb on + strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.073 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.149 kb on - strand, within GFF2660 at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.225 kb on + strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.226 kb on - strand at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.297 kb on + strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.298 kb on - strand, within GFF2661 at 346.391 kb on + strand, within GFF2661 at 346.392 kb on - strand, within GFF2661 at 346.392 kb on - strand, within GFF2661 at 346.427 kb on + strand, within GFF2661 at 346.428 kb on - strand, within GFF2661 at 346.464 kb on + strand at 346.464 kb on + strand at 346.464 kb on + strand at 346.465 kb on - strand at 346.465 kb on - strand at 346.465 kb on - strand at 346.508 kb on + strand at 346.508 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.544 kb on + strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.545 kb on - strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.644 kb on + strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.645 kb on - strand at 346.657 kb on + strand at 346.701 kb on + strand at 346.701 kb on + strand at 347.089 kb on + strand, within GFF2662 at 347.089 kb on + strand, within GFF2662 at 347.089 kb on + strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.090 kb on - strand, within GFF2662 at 347.132 kb on - strand, within GFF2662 at 347.132 kb on - strand, within GFF2662 at 347.163 kb on + strand, within GFF2662 at 347.163 kb on + strand, within GFF2662 at 347.163 kb on + strand, within GFF2662 at 347.164 kb on - strand, within GFF2662 at 347.164 kb on - strand, within GFF2662 at 347.164 kb on - strand, within GFF2662 at 347.164 kb on - strand, within GFF2662 at 347.164 kb on - strand, within GFF2662 at 347.225 kb on - strand, within GFF2662 at 347.351 kb on - strand, within GFF2662 at 347.402 kb on - strand, within GFF2662 at 347.514 kb on - strand, within GFF2662 at 347.594 kb on + strand, within GFF2662 at 347.595 kb on - strand, within GFF2662 at 347.595 kb on - strand, within GFF2662 at 347.595 kb on - strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.596 kb on + strand, within GFF2662 at 347.597 kb on + strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.597 kb on - strand, within GFF2662 at 347.674 kb on + strand, within GFF2662 at 347.675 kb on - strand, within GFF2662 at 347.681 kb on + strand, within GFF2662 at 347.682 kb on - strand, within GFF2662 at 347.682 kb on - strand, within GFF2662 at 347.682 kb on - strand, within GFF2662 at 347.771 kb on + strand, within GFF2662 at 347.772 kb on - strand, within GFF2662 at 347.772 kb on - strand, within GFF2662 at 347.772 kb on - strand, within GFF2662 at 347.775 kb on + strand, within GFF2662 at 347.775 kb on + strand, within GFF2662 at 347.776 kb on - strand, within GFF2662 at 347.834 kb on + strand at 347.836 kb on + strand at 347.837 kb on - strand at 347.965 kb on - strand at 347.965 kb on - strand at 347.966 kb on + strand at 347.966 kb on + strand at 347.966 kb on + strand at 347.967 kb on - strand at 347.967 kb on - strand at 347.976 kb on - strand at 347.979 kb on + strand at 347.979 kb on + strand at 347.980 kb on - strand at 347.980 kb on - strand at 348.038 kb on + strand, within GFF2663 at 348.038 kb on + strand, within GFF2663 at 348.038 kb on + strand, within GFF2663 at 348.038 kb on + strand, within GFF2663 at 348.038 kb on + strand, within GFF2663 at 348.038 kb on + strand, within GFF2663 at 348.039 kb on - strand, within GFF2663 at 348.181 kb on - strand, within GFF2663 at 348.181 kb on - strand, within GFF2663 at 348.181 kb on - strand, within GFF2663 at 348.215 kb on + strand, within GFF2663 at 348.216 kb on - strand, within GFF2663 at 348.216 kb on - strand, within GFF2663 at 348.222 kb on + strand, within GFF2663 at 348.223 kb on - strand, within GFF2663 at 348.223 kb on - strand, within GFF2663 at 348.328 kb on - strand, within GFF2663 at 348.426 kb on + strand at 348.427 kb on - strand at 348.497 kb on + strand at 348.497 kb on + strand at 348.498 kb on - strand at 348.498 kb on - strand at 348.498 kb on - strand at 348.543 kb on + strand at 348.543 kb on + strand at 348.544 kb on - strand at 348.544 kb on - strand at 348.753 kb on + strand, within GFF2664 at 348.754 kb on - strand, within GFF2664 at 348.754 kb on - strand, within GFF2664 at 348.754 kb on - strand, within GFF2664 at 348.754 kb on - strand, within GFF2664 at 348.885 kb on + strand, within GFF2664 at 348.886 kb on - strand, within GFF2664 at 348.886 kb on - strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.906 kb on + strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664 at 348.907 kb on - strand, within GFF2664
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 345,674 + +0.8 345,674 + +0.1 345,674 + -0.7 345,674 + -0.3 345,674 + +0.6 345,674 + -0.3 345,675 - +0.0 345,675 - +0.9 345,719 + -0.3 345,719 + +0.5 345,719 + +1.3 345,719 + +1.6 345,720 - +0.2 345,871 + GFF2659 0.43 -0.1 345,872 - GFF2659 0.43 +0.9 345,952 - GFF2659 0.88 +0.1 345,956 + -0.2 345,956 + -0.2 345,956 + +0.9 345,957 - +0.2 345,972 - +0.0 345,972 - -0.1 345,972 - -0.3 346,069 + GFF2660 0.36 +0.1 346,070 - GFF2660 0.37 +1.0 346,072 + GFF2660 0.38 +1.4 346,072 + GFF2660 0.38 -1.0 346,072 + GFF2660 0.38 -0.0 346,072 + GFF2660 0.38 -0.3 346,072 + GFF2660 0.38 +0.1 346,072 + GFF2660 0.38 +1.3 346,073 - GFF2660 0.38 +0.3 346,073 - GFF2660 0.38 -0.1 346,073 - GFF2660 0.38 -0.2 346,073 - GFF2660 0.38 +0.9 346,073 - GFF2660 0.38 +0.4 346,073 - GFF2660 0.38 +0.4 346,149 - GFF2660 0.74 -0.8 346,149 - GFF2660 0.74 -0.1 346,149 - GFF2660 0.74 +0.8 346,225 + -0.5 346,225 + -0.4 346,225 + -0.5 346,225 + -0.1 346,225 + +1.3 346,225 + -0.4 346,226 - +0.5 346,226 - -0.0 346,226 - +0.6 346,226 - -0.1 346,297 + GFF2661 0.31 +0.8 346,297 + GFF2661 0.31 +0.3 346,297 + GFF2661 0.31 -1.2 346,297 + GFF2661 0.31 +0.8 346,298 - GFF2661 0.32 +1.0 346,298 - GFF2661 0.32 -0.5 346,298 - GFF2661 0.32 -0.1 346,298 - GFF2661 0.32 -2.1 346,298 - GFF2661 0.32 -0.1 346,391 + GFF2661 0.73 +0.1 346,392 - GFF2661 0.73 +0.7 346,392 - GFF2661 0.73 +0.9 346,427 + GFF2661 0.89 -0.2 346,428 - GFF2661 0.89 -0.1 346,464 + +0.3 346,464 + -0.4 346,464 + +0.8 346,465 - +0.3 346,465 - +0.7 346,465 - +0.1 346,508 + -0.4 346,508 + -2.5 346,544 + -0.1 346,544 + -0.2 346,544 + +0.4 346,544 + +0.4 346,545 - +0.8 346,545 - +0.6 346,545 - -1.2 346,545 - -0.8 346,644 + -0.8 346,644 + -0.4 346,644 + -0.4 346,644 + -0.1 346,644 + -0.5 346,645 - +0.6 346,645 - -0.3 346,645 - -0.7 346,645 - -1.1 346,645 - +0.6 346,645 - +0.1 346,657 + -1.4 346,701 + -0.2 346,701 + +0.5 347,089 + GFF2662 0.33 +0.6 347,089 + GFF2662 0.33 -0.5 347,089 + GFF2662 0.33 -0.4 347,090 - GFF2662 0.33 -1.4 347,090 - GFF2662 0.33 -0.5 347,090 - GFF2662 0.33 -1.1 347,090 - GFF2662 0.33 +0.4 347,090 - GFF2662 0.33 +0.6 347,090 - GFF2662 0.33 +0.3 347,090 - GFF2662 0.33 +0.1 347,090 - GFF2662 0.33 -0.8 347,132 - GFF2662 0.36 +1.2 347,132 - GFF2662 0.36 -0.4 347,163 + GFF2662 0.38 +0.3 347,163 + GFF2662 0.38 +0.6 347,163 + GFF2662 0.38 +0.8 347,164 - GFF2662 0.38 +0.5 347,164 - GFF2662 0.38 +1.6 347,164 - GFF2662 0.38 +0.8 347,164 - GFF2662 0.38 -0.1 347,164 - GFF2662 0.38 -0.6 347,225 - GFF2662 0.43 -0.2 347,351 - GFF2662 0.53 -0.2 347,402 - GFF2662 0.57 -0.0 347,514 - GFF2662 0.66 +0.3 347,594 + GFF2662 0.72 +1.0 347,595 - GFF2662 0.72 -0.7 347,595 - GFF2662 0.72 -0.6 347,595 - GFF2662 0.72 +0.2 347,596 + GFF2662 0.72 +0.4 347,596 + GFF2662 0.72 -1.1 347,596 + GFF2662 0.72 +0.2 347,596 + GFF2662 0.72 -1.8 347,596 + GFF2662 0.72 +0.6 347,596 + GFF2662 0.72 -0.4 347,597 + GFF2662 0.72 -0.6 347,597 - GFF2662 0.72 +0.3 347,597 - GFF2662 0.72 +0.8 347,597 - GFF2662 0.72 +0.5 347,597 - GFF2662 0.72 +1.4 347,597 - GFF2662 0.72 -0.8 347,597 - GFF2662 0.72 +0.2 347,674 + GFF2662 0.78 -1.4 347,675 - GFF2662 0.78 -1.0 347,681 + GFF2662 0.78 +0.8 347,682 - GFF2662 0.79 -1.3 347,682 - GFF2662 0.79 +0.2 347,682 - GFF2662 0.79 +0.4 347,771 + GFF2662 0.85 -0.2 347,772 - GFF2662 0.86 -1.3 347,772 - GFF2662 0.86 -0.2 347,772 - GFF2662 0.86 +0.5 347,775 + GFF2662 0.86 +0.2 347,775 + GFF2662 0.86 +0.1 347,776 - GFF2662 0.86 -0.4 347,834 + -0.2 347,836 + -0.8 347,837 - +0.5 347,965 - +0.6 347,965 - +0.2 347,966 + -0.2 347,966 + -0.4 347,966 + +0.1 347,967 - +1.0 347,967 - +0.8 347,976 - -0.9 347,979 + -0.2 347,979 + +0.6 347,980 - +0.7 347,980 - +0.5 348,038 + GFF2663 0.17 +0.8 348,038 + GFF2663 0.17 -0.2 348,038 + GFF2663 0.17 +2.4 348,038 + GFF2663 0.17 -0.0 348,038 + GFF2663 0.17 +0.5 348,038 + GFF2663 0.17 +0.5 348,039 - GFF2663 0.17 -0.1 348,181 - GFF2663 0.47 +0.4 348,181 - GFF2663 0.47 -0.3 348,181 - GFF2663 0.47 +0.2 348,215 + GFF2663 0.55 -0.1 348,216 - GFF2663 0.55 +0.9 348,216 - GFF2663 0.55 -0.2 348,222 + GFF2663 0.56 -0.1 348,223 - GFF2663 0.56 +1.2 348,223 - GFF2663 0.56 -0.6 348,328 - GFF2663 0.79 -0.4 348,426 + -0.6 348,427 - +1.6 348,497 + -1.0 348,497 + -0.4 348,498 - -0.2 348,498 - -0.5 348,498 - +0.6 348,543 + -0.3 348,543 + -0.5 348,544 - +0.1 348,544 - +0.3 348,753 + GFF2664 0.22 +1.0 348,754 - GFF2664 0.23 -1.5 348,754 - GFF2664 0.23 +0.8 348,754 - GFF2664 0.23 -0.5 348,754 - GFF2664 0.23 -0.1 348,885 + GFF2664 0.40 +1.6 348,886 - GFF2664 0.40 +0.6 348,886 - GFF2664 0.40 +0.5 348,906 + GFF2664 0.43 -0.4 348,906 + GFF2664 0.43 -1.1 348,906 + GFF2664 0.43 +0.2 348,906 + GFF2664 0.43 +0.1 348,906 + GFF2664 0.43 -0.2 348,906 + GFF2664 0.43 -0.4 348,906 + GFF2664 0.43 +0.6 348,906 + GFF2664 0.43 -0.8 348,907 - GFF2664 0.43 -0.3 348,907 - GFF2664 0.43 +0.2 348,907 - GFF2664 0.43 +0.0 348,907 - GFF2664 0.43 +0.5 348,907 - GFF2664 0.43 +0.2 348,907 - GFF2664 0.43 -0.3 348,907 - GFF2664 0.43 +0.2 348,907 - GFF2664 0.43 -0.4 348,907 - GFF2664 0.43 -0.3 348,907 - GFF2664 0.43 -0.1 348,907 - GFF2664 0.43 +0.5
Or see this region's nucleotide sequence