Strain Fitness in Xanthobacter sp. DMC5 around GFF2655

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2654 and GFF2655 overlap by 4 nucleotidesGFF2655 and GFF2656 overlap by 4 nucleotidesGFF2656 and GFF2657 overlap by 4 nucleotides GFF2654 - hypothetical protein, at 341,554 to 343,506 GFF2654 GFF2655 - hypothetical protein, at 343,503 to 344,123 GFF2655 GFF2656 - hypothetical protein, at 344,120 to 344,443 GFF2656 GFF2657 - hypothetical protein, at 344,440 to 345,270 GFF2657 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1 2at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.766 kb on + strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.767 kb on - strand, within GFF2654at 342.841 kb on + strand, within GFF2654at 342.842 kb on - strand, within GFF2654at 342.905 kb on - strand, within GFF2654at 342.923 kb on + strand, within GFF2654at 342.923 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.976 kb on + strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.977 kb on - strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.982 kb on + strand, within GFF2654at 342.983 kb on - strand, within GFF2654at 342.983 kb on - strand, within GFF2654at 343.147 kb on - strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.232 kb on + strand, within GFF2654at 343.233 kb on - strand, within GFF2654at 343.451 kb on - strandat 343.451 kb on - strandat 343.644 kb on + strand, within GFF2655at 343.644 kb on + strand, within GFF2655at 343.644 kb on + strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.645 kb on - strand, within GFF2655at 343.650 kb on + strand, within GFF2655at 343.650 kb on + strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.651 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.724 kb on - strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.896 kb on + strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.897 kb on - strand, within GFF2655at 343.915 kb on + strand, within GFF2655at 343.916 kb on - strand, within GFF2655at 343.916 kb on - strand, within GFF2655at 343.932 kb on - strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.986 kb on + strand, within GFF2655at 343.987 kb on - strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.040 kb on + strand, within GFF2655at 344.041 kb on - strand, within GFF2655at 344.041 kb on - strand, within GFF2655at 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.076 kb on + strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.077 kb on - strandat 344.088 kb on + strandat 344.088 kb on + strandat 344.089 kb on - strandat 344.089 kb on - strandat 344.089 kb on - strandat 344.204 kb on + strand, within GFF2656at 344.204 kb on + strand, within GFF2656at 344.205 kb on - strand, within GFF2656at 344.205 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.229 kb on - strand, within GFF2656at 344.397 kb on + strand, within GFF2656at 344.397 kb on + strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.398 kb on - strand, within GFF2656at 344.423 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.475 kb on + strandat 344.476 kb on - strandat 344.476 kb on - strandat 344.476 kb on - strandat 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.545 kb on + strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.546 kb on - strand, within GFF2657at 344.609 kb on + strand, within GFF2657at 344.609 kb on + strand, within GFF2657at 344.609 kb on + strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.610 kb on - strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.657 kb on + strand, within GFF2657at 344.658 kb on - strand, within GFF2657at 344.658 kb on - strand, within GFF2657at 344.786 kb on + strand, within GFF2657at 344.786 kb on + strand, within GFF2657at 344.787 kb on - strand, within GFF2657at 344.787 kb on - strand, within GFF2657at 344.828 kb on + strand, within GFF2657at 344.828 kb on + strand, within GFF2657at 344.868 kb on - strand, within GFF2657at 345.026 kb on + strand, within GFF2657at 345.026 kb on + strand, within GFF2657at 345.106 kb on + strand, within GFF2657

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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342,532 + GFF2654 0.50 +0.2
342,532 + GFF2654 0.50 -0.0
342,532 + GFF2654 0.50 -0.9
342,532 + GFF2654 0.50 +0.2
342,532 + GFF2654 0.50 +0.3
342,532 + GFF2654 0.50 +0.2
342,533 - GFF2654 0.50 +0.3
342,533 - GFF2654 0.50 +0.2
342,533 - GFF2654 0.50 -0.8
342,533 - GFF2654 0.50 +0.1
342,533 - GFF2654 0.50 -0.5
342,533 - GFF2654 0.50 +1.1
342,766 + GFF2654 0.62 -0.4
342,766 + GFF2654 0.62 -0.0
342,766 + GFF2654 0.62 -0.2
342,766 + GFF2654 0.62 -0.6
342,766 + GFF2654 0.62 +0.7
342,766 + GFF2654 0.62 -0.0
342,766 + GFF2654 0.62 -0.1
342,767 - GFF2654 0.62 +0.4
342,767 - GFF2654 0.62 -0.1
342,767 - GFF2654 0.62 -0.1
342,767 - GFF2654 0.62 +0.2
342,767 - GFF2654 0.62 +0.1
342,767 - GFF2654 0.62 +0.1
342,767 - GFF2654 0.62 +0.1
342,767 - GFF2654 0.62 +0.1
342,767 - GFF2654 0.62 +0.0
342,767 - GFF2654 0.62 +0.1
342,767 - GFF2654 0.62 +0.2
342,841 + GFF2654 0.66 +0.8
342,842 - GFF2654 0.66 +0.4
342,905 - GFF2654 0.69 +0.4
342,923 + GFF2654 0.70 -1.3
342,923 + GFF2654 0.70 +0.4
342,976 + GFF2654 0.73 +0.7
342,976 + GFF2654 0.73 -0.1
342,976 + GFF2654 0.73 +0.3
342,976 + GFF2654 0.73 +1.6
342,976 + GFF2654 0.73 -1.4
342,977 - GFF2654 0.73 -0.8
342,977 - GFF2654 0.73 -0.2
342,977 - GFF2654 0.73 +0.1
342,977 - GFF2654 0.73 +0.2
342,982 + GFF2654 0.73 -0.7
342,982 + GFF2654 0.73 -0.3
342,982 + GFF2654 0.73 -0.4
342,983 - GFF2654 0.73 -0.6
342,983 - GFF2654 0.73 -1.0
343,147 - GFF2654 0.82 -0.5
343,232 + GFF2654 0.86 -0.0
343,232 + GFF2654 0.86 +0.0
343,232 + GFF2654 0.86 -0.6
343,233 - GFF2654 0.86 +0.0
343,451 - -0.5
343,451 - -0.5
343,644 + GFF2655 0.23 +0.6
343,644 + GFF2655 0.23 +1.0
343,644 + GFF2655 0.23 -0.4
343,645 - GFF2655 0.23 -0.3
343,645 - GFF2655 0.23 +0.5
343,645 - GFF2655 0.23 +1.0
343,645 - GFF2655 0.23 -0.1
343,645 - GFF2655 0.23 -0.8
343,645 - GFF2655 0.23 -0.1
343,645 - GFF2655 0.23 -0.4
343,645 - GFF2655 0.23 +0.9
343,645 - GFF2655 0.23 +0.6
343,650 + GFF2655 0.24 -1.2
343,650 + GFF2655 0.24 -0.1
343,651 - GFF2655 0.24 +0.3
343,651 - GFF2655 0.24 -0.1
343,651 - GFF2655 0.24 -0.1
343,724 - GFF2655 0.36 -0.3
343,724 - GFF2655 0.36 -0.5
343,724 - GFF2655 0.36 -0.3
343,724 - GFF2655 0.36 +0.7
343,896 + GFF2655 0.63 +1.0
343,896 + GFF2655 0.63 -0.5
343,896 + GFF2655 0.63 +0.8
343,896 + GFF2655 0.63 -0.3
343,897 - GFF2655 0.63 +0.6
343,897 - GFF2655 0.63 +0.0
343,897 - GFF2655 0.63 -0.4
343,897 - GFF2655 0.63 -0.1
343,897 - GFF2655 0.63 +0.3
343,897 - GFF2655 0.63 +0.3
343,897 - GFF2655 0.63 +1.3
343,915 + GFF2655 0.66 +0.6
343,916 - GFF2655 0.67 +0.2
343,916 - GFF2655 0.67 +0.1
343,932 - GFF2655 0.69 +0.7
343,986 + GFF2655 0.78 +0.9
343,986 + GFF2655 0.78 -0.2
343,986 + GFF2655 0.78 -0.5
343,986 + GFF2655 0.78 -0.1
343,986 + GFF2655 0.78 -0.1
343,986 + GFF2655 0.78 +0.0
343,986 + GFF2655 0.78 +0.3
343,986 + GFF2655 0.78 -0.7
343,987 - GFF2655 0.78 -0.1
344,040 + GFF2655 0.86 +0.2
344,040 + GFF2655 0.86 -0.2
344,040 + GFF2655 0.86 +1.2
344,041 - GFF2655 0.87 -0.8
344,041 - GFF2655 0.87 -0.8
344,076 + +0.1
344,076 + +1.2
344,076 + -0.8
344,076 + -0.0
344,076 + +1.0
344,076 + +0.6
344,077 - +1.9
344,077 - +0.9
344,077 - -0.4
344,077 - +1.2
344,088 + -0.4
344,088 + -0.1
344,089 - +0.5
344,089 - -2.1
344,089 - -0.6
344,204 + GFF2656 0.26 +0.2
344,204 + GFF2656 0.26 -0.0
344,205 - GFF2656 0.26 +0.8
344,205 - GFF2656 0.26 +1.1
344,229 - GFF2656 0.34 -0.6
344,229 - GFF2656 0.34 +0.5
344,229 - GFF2656 0.34 -0.4
344,229 - GFF2656 0.34 +0.9
344,397 + GFF2656 0.85 -0.2
344,397 + GFF2656 0.85 -0.5
344,398 - GFF2656 0.86 -0.6
344,398 - GFF2656 0.86 +0.9
344,398 - GFF2656 0.86 +0.9
344,423 + -0.4
344,475 + -0.0
344,475 + +0.2
344,475 + +0.4
344,475 + -0.8
344,475 + +0.6
344,475 + -0.0
344,476 - +0.0
344,476 - +1.1
344,476 - -0.8
344,545 + GFF2657 0.13 -0.8
344,545 + GFF2657 0.13 +1.2
344,545 + GFF2657 0.13 -1.3
344,545 + GFF2657 0.13 +0.7
344,545 + GFF2657 0.13 -0.7
344,545 + GFF2657 0.13 +0.8
344,545 + GFF2657 0.13 +0.7
344,546 - GFF2657 0.13 +1.1
344,546 - GFF2657 0.13 +1.0
344,546 - GFF2657 0.13 +0.4
344,546 - GFF2657 0.13 -0.2
344,546 - GFF2657 0.13 +0.7
344,546 - GFF2657 0.13 +0.2
344,546 - GFF2657 0.13 -0.0
344,546 - GFF2657 0.13 -0.1
344,609 + GFF2657 0.20 +0.4
344,609 + GFF2657 0.20 +0.8
344,609 + GFF2657 0.20 +0.5
344,610 - GFF2657 0.20 +0.4
344,610 - GFF2657 0.20 +0.7
344,610 - GFF2657 0.20 +0.2
344,610 - GFF2657 0.20 -0.4
344,610 - GFF2657 0.20 +0.3
344,610 - GFF2657 0.20 -0.4
344,657 + GFF2657 0.26 -0.5
344,657 + GFF2657 0.26 -0.6
344,657 + GFF2657 0.26 -0.3
344,657 + GFF2657 0.26 -0.7
344,657 + GFF2657 0.26 +0.8
344,657 + GFF2657 0.26 +0.2
344,658 - GFF2657 0.26 -1.0
344,658 - GFF2657 0.26 -0.8
344,786 + GFF2657 0.42 -0.7
344,786 + GFF2657 0.42 +0.2
344,787 - GFF2657 0.42 -0.6
344,787 - GFF2657 0.42 -0.6
344,828 + GFF2657 0.47 +0.1
344,828 + GFF2657 0.47 +1.2
344,868 - GFF2657 0.52 +0.3
345,026 + GFF2657 0.71 -0.2
345,026 + GFF2657 0.71 +0.5
345,106 + GFF2657 0.80 -0.2

Or see this region's nucleotide sequence