Strain Fitness in Xanthobacter sp. DMC5 around GFF2653

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2651 and GFF2652 are separated by 31 nucleotidesGFF2652 and GFF2653 overlap by 4 nucleotidesGFF2653 and GFF2654 overlap by 4 nucleotides GFF2651 - Methanol dehydrogenase [cytochrome c] subunit 1, at 338,207 to 339,928 GFF2651 GFF2652 - hypothetical protein, at 339,960 to 340,532 GFF2652 GFF2653 - Cytochrome c oxidase subunit 2, at 340,529 to 341,557 GFF2653 GFF2654 - hypothetical protein, at 341,554 to 343,506 GFF2654 Position (kb) 340 341 342Strain fitness (log2 ratio) -2 -1 0 1 2 3at 339.564 kb on - strand, within GFF2651at 339.635 kb on + strand, within GFF2651at 339.761 kb on + strandat 339.761 kb on + strandat 339.761 kb on + strandat 339.761 kb on + strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.859 kb on + strandat 339.859 kb on + strandat 339.859 kb on + strandat 339.860 kb on - strandat 339.860 kb on - strandat 339.994 kb on - strandat 340.016 kb on + strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.041 kb on + strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.101 kb on + strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.188 kb on + strand, within GFF2652at 340.188 kb on + strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.265 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.270 kb on - strand, within GFF2652at 340.301 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.489 kb on + strandat 340.523 kb on + strandat 340.523 kb on + strandat 340.946 kb on + strand, within GFF2653at 340.947 kb on - strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.488 kb on + strandat 341.488 kb on + strandat 341.489 kb on - strandat 341.489 kb on - strandat 341.489 kb on - strandat 341.538 kb on - strandat 341.716 kb on + strandat 341.716 kb on + strandat 341.716 kb on + strandat 341.717 kb on - strandat 341.717 kb on - strandat 341.717 kb on - strandat 341.821 kb on + strand, within GFF2654at 341.821 kb on + strand, within GFF2654at 341.822 kb on - strand, within GFF2654at 341.835 kb on + strand, within GFF2654at 341.836 kb on - strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.899 kb on + strand, within GFF2654at 341.900 kb on - strand, within GFF2654at 341.900 kb on - strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.962 kb on + strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.966 kb on - strand, within GFF2654at 341.971 kb on + strand, within GFF2654at 341.971 kb on + strand, within GFF2654at 341.972 kb on - strand, within GFF2654at 342.067 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.094 kb on + strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.095 kb on - strand, within GFF2654at 342.316 kb on + strand, within GFF2654at 342.368 kb on - strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.388 kb on + strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.389 kb on - strand, within GFF2654at 342.463 kb on + strand, within GFF2654at 342.475 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.532 kb on + strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654at 342.533 kb on - strand, within GFF2654

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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339,564 - GFF2651 0.79 -0.5
339,635 + GFF2651 0.83 +0.5
339,761 + -0.0
339,761 + +0.1
339,761 + -0.3
339,761 + -0.4
339,762 - -1.0
339,762 - +0.3
339,762 - +0.1
339,762 - -0.7
339,859 + +0.0
339,859 + +0.4
339,859 + +0.1
339,860 - +0.3
339,860 - -0.2
339,994 - +0.3
340,016 + -0.4
340,017 - +0.4
340,017 - -0.4
340,017 - +0.8
340,017 - +0.6
340,017 - +0.7
340,017 - -0.5
340,017 - -0.7
340,017 - +0.8
340,020 + GFF2652 0.10 +0.6
340,020 + GFF2652 0.10 +0.6
340,020 + GFF2652 0.10 -0.2
340,020 + GFF2652 0.10 -0.1
340,021 - GFF2652 0.11 +0.5
340,021 - GFF2652 0.11 -0.1
340,021 - GFF2652 0.11 -0.3
340,021 - GFF2652 0.11 -0.6
340,021 - GFF2652 0.11 +0.3
340,041 + GFF2652 0.14 -0.2
340,042 - GFF2652 0.14 -0.4
340,042 - GFF2652 0.14 -1.2
340,042 - GFF2652 0.14 -0.0
340,101 + GFF2652 0.25 -0.6
340,102 - GFF2652 0.25 -0.3
340,102 - GFF2652 0.25 +0.7
340,102 - GFF2652 0.25 -2.0
340,188 + GFF2652 0.40 -1.8
340,188 + GFF2652 0.40 +0.6
340,189 - GFF2652 0.40 +0.4
340,189 - GFF2652 0.40 +0.2
340,189 - GFF2652 0.40 -0.3
340,265 + GFF2652 0.53 -2.4
340,269 + GFF2652 0.54 -0.8
340,269 + GFF2652 0.54 +0.3
340,269 + GFF2652 0.54 +0.5
340,270 - GFF2652 0.54 +0.3
340,301 + GFF2652 0.60 -0.1
340,380 + GFF2652 0.73 +0.6
340,380 + GFF2652 0.73 +0.2
340,380 + GFF2652 0.73 -1.2
340,380 + GFF2652 0.73 -0.2
340,380 + GFF2652 0.73 +0.2
340,380 + GFF2652 0.73 -0.8
340,380 + GFF2652 0.73 +0.3
340,380 + GFF2652 0.73 +0.7
340,380 + GFF2652 0.73 +1.1
340,381 - GFF2652 0.73 -0.1
340,381 - GFF2652 0.73 +1.2
340,381 - GFF2652 0.73 -0.2
340,381 - GFF2652 0.73 +0.6
340,381 - GFF2652 0.73 +0.8
340,381 - GFF2652 0.73 -0.9
340,463 + GFF2652 0.88 -0.4
340,463 + GFF2652 0.88 +0.1
340,463 + GFF2652 0.88 +2.1
340,463 + GFF2652 0.88 -0.0
340,463 + GFF2652 0.88 -2.0
340,463 + GFF2652 0.88 +0.4
340,463 + GFF2652 0.88 -0.5
340,463 + GFF2652 0.88 +0.6
340,489 + +0.6
340,523 + +0.7
340,523 + -0.8
340,946 + GFF2653 0.41 -0.2
340,947 - GFF2653 0.41 -0.5
341,438 + GFF2653 0.88 -0.2
341,438 + GFF2653 0.88 -0.5
341,438 + GFF2653 0.88 -0.8
341,438 + GFF2653 0.88 +0.5
341,439 - GFF2653 0.88 -0.2
341,439 - GFF2653 0.88 +0.7
341,488 + +0.2
341,488 + -0.7
341,489 - +0.5
341,489 - -1.4
341,489 - +0.6
341,538 - +0.1
341,716 + +0.3
341,716 + -0.3
341,716 + -1.4
341,717 - +0.2
341,717 - -0.0
341,717 - +0.3
341,821 + GFF2654 0.14 -0.4
341,821 + GFF2654 0.14 +0.3
341,822 - GFF2654 0.14 -0.3
341,835 + GFF2654 0.14 -0.8
341,836 - GFF2654 0.14 -0.7
341,899 + GFF2654 0.18 -0.2
341,899 + GFF2654 0.18 -1.1
341,899 + GFF2654 0.18 +0.3
341,899 + GFF2654 0.18 -0.4
341,900 - GFF2654 0.18 -2.0
341,900 - GFF2654 0.18 -0.5
341,962 + GFF2654 0.21 -0.3
341,962 + GFF2654 0.21 +1.1
341,962 + GFF2654 0.21 -0.8
341,962 + GFF2654 0.21 +0.9
341,962 + GFF2654 0.21 +3.0
341,966 - GFF2654 0.21 +1.0
341,966 - GFF2654 0.21 +0.2
341,966 - GFF2654 0.21 -0.4
341,971 + GFF2654 0.21 -0.4
341,971 + GFF2654 0.21 +0.6
341,972 - GFF2654 0.21 +0.2
342,067 + GFF2654 0.26 -0.8
342,094 + GFF2654 0.28 -0.1
342,094 + GFF2654 0.28 -0.0
342,094 + GFF2654 0.28 -0.1
342,094 + GFF2654 0.28 -0.4
342,094 + GFF2654 0.28 +0.4
342,095 - GFF2654 0.28 -1.2
342,095 - GFF2654 0.28 -0.2
342,095 - GFF2654 0.28 -0.1
342,095 - GFF2654 0.28 -0.6
342,095 - GFF2654 0.28 +0.0
342,095 - GFF2654 0.28 +1.1
342,095 - GFF2654 0.28 -0.1
342,316 + GFF2654 0.39 -0.3
342,368 - GFF2654 0.42 +1.1
342,388 + GFF2654 0.43 -0.0
342,388 + GFF2654 0.43 +0.2
342,388 + GFF2654 0.43 -0.1
342,389 - GFF2654 0.43 -0.0
342,389 - GFF2654 0.43 -0.7
342,389 - GFF2654 0.43 -0.6
342,389 - GFF2654 0.43 -0.9
342,389 - GFF2654 0.43 +1.8
342,389 - GFF2654 0.43 -0.4
342,389 - GFF2654 0.43 -1.7
342,389 - GFF2654 0.43 -0.5
342,389 - GFF2654 0.43 +1.6
342,463 + GFF2654 0.47 +0.7
342,475 + GFF2654 0.47 +0.6
342,532 + GFF2654 0.50 +0.2
342,532 + GFF2654 0.50 -0.0
342,532 + GFF2654 0.50 -0.9
342,532 + GFF2654 0.50 +0.2
342,532 + GFF2654 0.50 +0.3
342,532 + GFF2654 0.50 +0.2
342,533 - GFF2654 0.50 +0.3
342,533 - GFF2654 0.50 +0.2
342,533 - GFF2654 0.50 -0.8
342,533 - GFF2654 0.50 +0.1
342,533 - GFF2654 0.50 -0.5
342,533 - GFF2654 0.50 +1.1

Or see this region's nucleotide sequence