Strain Fitness in Xanthobacter sp. DMC5 around GFF2644

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2643 and GFF2644 overlap by 4 nucleotidesGFF2644 and GFF2645 are separated by 1 nucleotides GFF2643 - hypothetical protein, at 327,543 to 328,595 GFF2643 GFF2644 - hypothetical protein, at 328,592 to 329,833 GFF2644 GFF2645 - hypothetical protein, at 329,835 to 330,080 GFF2645 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1at 327.609 kb on - strandat 327.609 kb on - strandat 327.690 kb on + strand, within GFF2643at 327.690 kb on + strand, within GFF2643at 327.691 kb on - strand, within GFF2643at 327.834 kb on - strand, within GFF2643at 327.893 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.913 kb on - strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.945 kb on + strand, within GFF2643at 327.992 kb on - strand, within GFF2643at 328.124 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.156 kb on - strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.188 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.212 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.314 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.470 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.488 kb on + strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.489 kb on - strand, within GFF2643at 328.589 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.591 kb on + strandat 328.592 kb on - strandat 328.592 kb on - strandat 328.778 kb on + strand, within GFF2644at 328.779 kb on - strand, within GFF2644at 328.779 kb on - strand, within GFF2644at 328.822 kb on - strand, within GFF2644at 328.823 kb on + strand, within GFF2644at 328.823 kb on + strand, within GFF2644at 328.824 kb on - strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.877 kb on + strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 328.878 kb on - strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.071 kb on + strand, within GFF2644at 329.072 kb on - strand, within GFF2644at 329.203 kb on + strand, within GFF2644at 329.215 kb on - strand, within GFF2644at 329.278 kb on + strand, within GFF2644at 329.318 kb on - strand, within GFF2644at 329.435 kb on + strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.436 kb on - strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.552 kb on + strand, within GFF2644at 329.553 kb on - strand, within GFF2644at 329.579 kb on + strand, within GFF2644at 329.579 kb on + strand, within GFF2644at 329.822 kb on + strandat 329.822 kb on + strandat 329.823 kb on - strandat 329.834 kb on + strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.835 kb on - strandat 329.890 kb on + strand, within GFF2645at 329.890 kb on + strand, within GFF2645at 329.890 kb on + strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.891 kb on - strand, within GFF2645at 329.928 kb on + strand, within GFF2645at 330.201 kb on - strandat 330.271 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.277 kb on + strandat 330.278 kb on - strandat 330.278 kb on - strandat 330.285 kb on + strandat 330.285 kb on + strandat 330.286 kb on - strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.287 kb on + strandat 330.288 kb on - strandat 330.288 kb on - strandat 330.315 kb on + strandat 330.315 kb on + strandat 330.354 kb on - strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.503 kb on + strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.504 kb on - strandat 330.546 kb on + strandat 330.565 kb on + strandat 330.566 kb on - strandat 330.566 kb on - strandat 330.568 kb on - strandat 330.629 kb on + strandat 330.629 kb on + strandat 330.630 kb on - strandat 330.630 kb on - strandat 330.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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327,609 - +0.1
327,609 - +0.2
327,690 + GFF2643 0.14 -0.8
327,690 + GFF2643 0.14 +0.5
327,691 - GFF2643 0.14 -1.0
327,834 - GFF2643 0.28 -1.5
327,893 - GFF2643 0.33 -0.5
327,913 - GFF2643 0.35 +0.2
327,913 - GFF2643 0.35 -0.6
327,913 - GFF2643 0.35 +0.5
327,913 - GFF2643 0.35 +0.0
327,913 - GFF2643 0.35 +0.7
327,913 - GFF2643 0.35 -0.3
327,913 - GFF2643 0.35 -1.3
327,945 + GFF2643 0.38 -0.2
327,945 + GFF2643 0.38 +0.4
327,945 + GFF2643 0.38 -0.1
327,945 + GFF2643 0.38 -0.3
327,992 - GFF2643 0.43 +0.1
328,124 - GFF2643 0.55 -0.0
328,156 - GFF2643 0.58 +0.1
328,156 - GFF2643 0.58 -0.2
328,188 + GFF2643 0.61 -0.0
328,188 + GFF2643 0.61 -0.5
328,188 + GFF2643 0.61 -1.2
328,188 + GFF2643 0.61 -0.7
328,188 + GFF2643 0.61 -0.9
328,188 + GFF2643 0.61 +0.1
328,212 + GFF2643 0.64 -0.0
328,212 + GFF2643 0.64 -0.3
328,212 + GFF2643 0.64 +1.6
328,314 + GFF2643 0.73 -0.7
328,314 + GFF2643 0.73 -0.2
328,470 + GFF2643 0.88 +0.2
328,470 + GFF2643 0.88 -0.6
328,470 + GFF2643 0.88 +0.8
328,488 + GFF2643 0.90 -0.2
328,488 + GFF2643 0.90 -1.1
328,488 + GFF2643 0.90 +1.0
328,488 + GFF2643 0.90 +0.1
328,488 + GFF2643 0.90 -0.5
328,488 + GFF2643 0.90 -0.9
328,488 + GFF2643 0.90 -0.1
328,489 - GFF2643 0.90 +0.1
328,489 - GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 -0.7
328,489 - GFF2643 0.90 -0.9
328,489 - GFF2643 0.90 -0.4
328,489 - GFF2643 0.90 +0.0
328,489 - GFF2643 0.90 -0.2
328,489 - GFF2643 0.90 -0.2
328,589 + -0.8
328,591 + -0.4
328,591 + -0.1
328,591 + -0.1
328,591 + -0.4
328,592 - -0.3
328,592 - +0.3
328,778 + GFF2644 0.15 +0.0
328,779 - GFF2644 0.15 +0.3
328,779 - GFF2644 0.15 -0.2
328,822 - GFF2644 0.19 -1.2
328,823 + GFF2644 0.19 -0.3
328,823 + GFF2644 0.19 -0.3
328,824 - GFF2644 0.19 -0.4
328,877 + GFF2644 0.23 -0.2
328,877 + GFF2644 0.23 +0.0
328,877 + GFF2644 0.23 +0.1
328,877 + GFF2644 0.23 -0.2
328,878 - GFF2644 0.23 -0.6
328,878 - GFF2644 0.23 +0.3
328,878 - GFF2644 0.23 -0.4
328,878 - GFF2644 0.23 +0.2
328,878 - GFF2644 0.23 +0.0
328,878 - GFF2644 0.23 -0.5
328,878 - GFF2644 0.23 -0.4
328,878 - GFF2644 0.23 +0.8
329,071 + GFF2644 0.39 -0.2
329,071 + GFF2644 0.39 +0.9
329,071 + GFF2644 0.39 -0.5
329,072 - GFF2644 0.39 -0.4
329,203 + GFF2644 0.49 -0.5
329,215 - GFF2644 0.50 -0.2
329,278 + GFF2644 0.55 +1.2
329,318 - GFF2644 0.58 -2.4
329,435 + GFF2644 0.68 +0.2
329,436 - GFF2644 0.68 -0.6
329,436 - GFF2644 0.68 -0.4
329,552 + GFF2644 0.77 +1.0
329,552 + GFF2644 0.77 -0.3
329,552 + GFF2644 0.77 +1.2
329,553 - GFF2644 0.77 -0.7
329,579 + GFF2644 0.79 -0.4
329,579 + GFF2644 0.79 -0.3
329,822 + +0.8
329,822 + +0.2
329,823 - -1.0
329,834 + -0.8
329,835 - +1.0
329,835 - -0.2
329,835 - -0.1
329,835 - +0.9
329,835 - +0.4
329,890 + GFF2645 0.22 +0.5
329,890 + GFF2645 0.22 -0.2
329,890 + GFF2645 0.22 +0.1
329,891 - GFF2645 0.23 -0.3
329,891 - GFF2645 0.23 +0.6
329,891 - GFF2645 0.23 +0.7
329,891 - GFF2645 0.23 -0.4
329,928 + GFF2645 0.38 -0.2
330,201 - -0.2
330,271 + -2.8
330,277 + +0.7
330,277 + -1.4
330,277 + -1.2
330,278 - +0.6
330,278 - -0.1
330,285 + +0.2
330,285 + -0.3
330,286 - -1.0
330,287 + +0.9
330,287 + +0.0
330,287 + -0.2
330,288 - -0.7
330,288 - -1.0
330,315 + -0.5
330,315 + -0.9
330,354 - -0.2
330,503 + -0.3
330,503 + +0.8
330,503 + -0.7
330,503 + -0.8
330,504 - +1.3
330,504 - +0.2
330,504 - +1.2
330,504 - -0.2
330,504 - -0.2
330,504 - -0.0
330,504 - -0.4
330,504 - -0.3
330,546 + -0.3
330,565 + -0.2
330,566 - -0.6
330,566 - +0.3
330,568 - +0.5
330,629 + -0.1
330,629 + +0.0
330,630 - -0.6
330,630 - +0.4
330,751 + +0.8

Or see this region's nucleotide sequence