Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2626 and GFF2627 are separated by 36 nucleotides GFF2627 and GFF2628 overlap by 14 nucleotides GFF2628 and GFF2629 are separated by 38 nucleotides GFF2629 and GFF2630 are separated by 144 nucleotides
GFF2626 - L-carnitine dehydrogenase, at 312,727 to 313,020
GFF2626
GFF2627 - L-carnitine dehydrogenase, at 313,057 to 313,440
GFF2627
GFF2628 - Gluconate 5-dehydrogenase, at 313,427 to 314,206
GFF2628
GFF2629 - hypothetical protein, at 314,245 to 314,757
GFF2629
GFF2630 - hypothetical protein, at 314,902 to 315,726
GFF2630
Position (kb) 313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 312.571 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.745 kb on + strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 312.746 kb on - strand at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.105 kb on + strand, within GFF2627 at 313.106 kb on - strand, within GFF2627 at 313.166 kb on + strand, within GFF2627 at 313.167 kb on - strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.212 kb on + strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.213 kb on - strand, within GFF2627 at 313.231 kb on + strand, within GFF2627 at 313.232 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.256 kb on - strand, within GFF2627 at 313.606 kb on + strand, within GFF2628 at 313.606 kb on + strand, within GFF2628 at 313.607 kb on - strand, within GFF2628 at 313.607 kb on - strand, within GFF2628 at 313.913 kb on + strand, within GFF2628 at 313.913 kb on + strand, within GFF2628 at 313.914 kb on - strand, within GFF2628 at 313.995 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.996 kb on + strand, within GFF2628 at 313.997 kb on - strand, within GFF2628 at 313.997 kb on - strand, within GFF2628 at 314.060 kb on - strand, within GFF2628 at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.155 kb on + strand at 314.156 kb on - strand at 314.156 kb on - strand at 314.156 kb on - strand at 314.245 kb on + strand at 314.304 kb on - strand, within GFF2629 at 314.304 kb on - strand, within GFF2629 at 314.487 kb on - strand, within GFF2629 at 314.570 kb on + strand, within GFF2629 at 314.570 kb on + strand, within GFF2629 at 314.571 kb on - strand, within GFF2629 at 314.571 kb on - strand, within GFF2629 at 314.575 kb on + strand, within GFF2629 at 314.633 kb on + strand, within GFF2629 at 314.633 kb on + strand, within GFF2629 at 314.634 kb on - strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.687 kb on + strand, within GFF2629 at 314.688 kb on - strand, within GFF2629 at 314.688 kb on - strand, within GFF2629 at 314.688 kb on - strand, within GFF2629 at 314.688 kb on - strand, within GFF2629 at 314.688 kb on - strand, within GFF2629 at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.724 kb on + strand at 314.725 kb on - strand at 314.725 kb on - strand at 314.725 kb on - strand at 314.725 kb on - strand at 314.725 kb on - strand at 314.725 kb on - strand at 314.793 kb on + strand at 314.794 kb on - strand at 314.820 kb on - strand at 314.820 kb on - strand at 314.955 kb on + strand at 314.955 kb on + strand at 314.955 kb on + strand at 314.956 kb on - strand at 314.956 kb on - strand at 315.062 kb on + strand, within GFF2630 at 315.062 kb on + strand, within GFF2630 at 315.063 kb on - strand, within GFF2630 at 315.063 kb on - strand, within GFF2630
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 312,571 + -0.9 312,745 + +0.1 312,745 + -0.5 312,745 + +0.2 312,745 + -1.3 312,745 + -0.2 312,746 - -0.7 312,746 - +0.6 312,746 - +0.6 312,746 - -0.6 312,746 - -0.3 312,746 - -0.3 312,746 - -0.7 312,746 - -0.9 313,105 + GFF2627 0.12 +0.1 313,105 + GFF2627 0.12 +1.0 313,105 + GFF2627 0.12 -1.9 313,105 + GFF2627 0.12 -1.2 313,106 - GFF2627 0.13 +0.4 313,166 + GFF2627 0.28 -0.5 313,167 - GFF2627 0.29 -0.4 313,212 + GFF2627 0.40 -0.1 313,212 + GFF2627 0.40 +0.6 313,213 - GFF2627 0.41 +1.3 313,213 - GFF2627 0.41 +0.1 313,231 + GFF2627 0.45 -0.7 313,232 - GFF2627 0.46 -0.3 313,256 - GFF2627 0.52 +0.4 313,256 - GFF2627 0.52 -0.7 313,256 - GFF2627 0.52 -0.6 313,256 - GFF2627 0.52 -2.2 313,606 + GFF2628 0.23 -0.0 313,606 + GFF2628 0.23 -0.4 313,607 - GFF2628 0.23 -0.0 313,607 - GFF2628 0.23 -1.3 313,913 + GFF2628 0.62 -1.8 313,913 + GFF2628 0.62 -0.4 313,914 - GFF2628 0.62 -1.3 313,995 + GFF2628 0.73 -0.6 313,996 + GFF2628 0.73 -0.2 313,996 + GFF2628 0.73 -0.1 313,996 + GFF2628 0.73 -1.1 313,996 + GFF2628 0.73 -0.4 313,997 - GFF2628 0.73 -0.8 313,997 - GFF2628 0.73 -1.2 314,060 - GFF2628 0.81 -0.8 314,155 + -0.4 314,155 + -2.1 314,155 + +0.6 314,155 + -0.1 314,155 + -0.6 314,155 + +0.8 314,155 + +0.9 314,156 - +0.6 314,156 - +2.4 314,156 - +0.4 314,245 + +0.4 314,304 - GFF2629 0.12 +0.6 314,304 - GFF2629 0.12 -0.2 314,487 - GFF2629 0.47 -1.1 314,570 + GFF2629 0.63 +0.9 314,570 + GFF2629 0.63 +0.4 314,571 - GFF2629 0.64 -0.6 314,571 - GFF2629 0.64 +0.1 314,575 + GFF2629 0.64 -1.2 314,633 + GFF2629 0.76 +1.0 314,633 + GFF2629 0.76 -0.3 314,634 - GFF2629 0.76 +1.2 314,687 + GFF2629 0.86 -0.0 314,687 + GFF2629 0.86 -0.2 314,687 + GFF2629 0.86 +0.1 314,687 + GFF2629 0.86 +0.5 314,687 + GFF2629 0.86 +0.7 314,687 + GFF2629 0.86 +0.7 314,688 - GFF2629 0.86 -1.9 314,688 - GFF2629 0.86 -0.9 314,688 - GFF2629 0.86 -0.4 314,688 - GFF2629 0.86 -1.1 314,688 - GFF2629 0.86 -0.7 314,724 + -0.2 314,724 + +0.8 314,724 + -0.9 314,724 + -0.1 314,724 + -0.8 314,724 + -0.6 314,724 + +0.0 314,724 + -1.0 314,724 + -0.2 314,724 + -0.7 314,724 + -0.1 314,724 + -1.4 314,724 + +1.3 314,725 - -0.2 314,725 - +0.2 314,725 - -0.4 314,725 - +0.1 314,725 - -0.8 314,725 - +0.4 314,793 + +0.2 314,794 - -0.3 314,820 - +1.0 314,820 - -0.6 314,955 + -0.2 314,955 + -0.3 314,955 + +0.3 314,956 - -1.0 314,956 - -0.5 315,062 + GFF2630 0.19 -0.8 315,062 + GFF2630 0.19 -0.0 315,063 - GFF2630 0.20 -0.4 315,063 - GFF2630 0.20 +0.5
Or see this region's nucleotide sequence