Strain Fitness in Xanthobacter sp. DMC5 around GFF2619

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2618 and GFF2619 are separated by 5 nucleotidesGFF2619 and GFF2620 are separated by 387 nucleotides GFF2618 - Conjugal transfer protein TraG, at 300,619 to 302,598 GFF2618 GFF2619 - hypothetical protein, at 302,604 to 303,029 GFF2619 GFF2620 - hypothetical protein, at 303,417 to 304,076 GFF2620 Position (kb) 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 301.618 kb on + strand, within GFF2618at 301.619 kb on - strand, within GFF2618at 301.705 kb on + strand, within GFF2618at 301.705 kb on + strand, within GFF2618at 301.706 kb on - strand, within GFF2618at 301.706 kb on - strand, within GFF2618at 301.900 kb on + strand, within GFF2618at 301.954 kb on + strand, within GFF2618at 301.954 kb on + strand, within GFF2618at 301.955 kb on - strand, within GFF2618at 301.955 kb on - strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.083 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.121 kb on + strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.122 kb on - strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.245 kb on + strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.246 kb on - strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.248 kb on + strand, within GFF2618at 302.249 kb on - strand, within GFF2618at 302.529 kb on + strandat 302.529 kb on + strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.530 kb on - strandat 302.640 kb on + strandat 302.641 kb on - strandat 302.641 kb on - strandat 302.641 kb on - strandat 302.676 kb on + strand, within GFF2619at 302.676 kb on + strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.677 kb on - strand, within GFF2619at 302.835 kb on + strand, within GFF2619at 302.860 kb on + strand, within GFF2619at 302.861 kb on - strand, within GFF2619at 302.861 kb on - strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.937 kb on + strand, within GFF2619at 302.938 kb on - strand, within GFF2619at 303.028 kb on - strandat 303.028 kb on - strandat 303.034 kb on + strandat 303.035 kb on - strandat 303.253 kb on + strandat 303.258 kb on + strandat 303.269 kb on + strandat 303.269 kb on + strandat 303.270 kb on - strandat 303.270 kb on - strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.280 kb on + strandat 303.281 kb on - strandat 303.281 kb on - strandat 303.293 kb on + strandat 303.293 kb on + strandat 303.293 kb on + strandat 303.294 kb on - strandat 303.294 kb on - strandat 303.294 kb on - strandat 303.413 kb on + strandat 303.452 kb on + strandat 303.453 kb on - strandat 303.453 kb on - strandat 303.453 kb on - strandat 303.460 kb on - strandat 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.574 kb on + strand, within GFF2620at 303.575 kb on - strand, within GFF2620at 303.575 kb on - strand, within GFF2620at 303.645 kb on + strand, within GFF2620at 303.646 kb on - strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.672 kb on + strand, within GFF2620at 303.673 kb on - strand, within GFF2620at 303.673 kb on - strand, within GFF2620at 303.730 kb on + strand, within GFF2620at 303.730 kb on + strand, within GFF2620at 303.731 kb on - strand, within GFF2620at 303.787 kb on + strand, within GFF2620at 303.787 kb on + strand, within GFF2620at 303.788 kb on - strand, within GFF2620at 303.820 kb on + strand, within GFF2620at 303.821 kb on - strand, within GFF2620at 303.856 kb on + strand, within GFF2620at 303.878 kb on - strand, within GFF2620at 303.878 kb on - strand, within GFF2620at 303.878 kb on - strand, within GFF2620at 303.997 kb on + strand, within GFF2620at 303.997 kb on + strand, within GFF2620at 303.997 kb on + strand, within GFF2620at 303.998 kb on - strand, within GFF2620at 304.021 kb on + strandat 304.021 kb on + strandat 304.021 kb on + strandat 304.021 kb on + strandat 304.021 kb on + strandat 304.021 kb on + strandat 304.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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301,618 + GFF2618 0.50 -0.5
301,619 - GFF2618 0.51 +0.2
301,705 + GFF2618 0.55 +0.2
301,705 + GFF2618 0.55 -0.4
301,706 - GFF2618 0.55 +0.6
301,706 - GFF2618 0.55 +0.2
301,900 + GFF2618 0.65 -0.3
301,954 + GFF2618 0.67 -0.8
301,954 + GFF2618 0.67 -0.6
301,955 - GFF2618 0.67 +0.1
301,955 - GFF2618 0.67 +0.2
302,083 + GFF2618 0.74 -0.6
302,083 + GFF2618 0.74 -0.8
302,083 + GFF2618 0.74 +0.1
302,083 + GFF2618 0.74 -0.1
302,083 + GFF2618 0.74 +0.1
302,121 + GFF2618 0.76 -0.6
302,121 + GFF2618 0.76 -0.1
302,121 + GFF2618 0.76 -0.6
302,122 - GFF2618 0.76 -1.2
302,122 - GFF2618 0.76 +0.0
302,122 - GFF2618 0.76 +0.5
302,122 - GFF2618 0.76 +0.2
302,122 - GFF2618 0.76 +0.5
302,122 - GFF2618 0.76 -0.4
302,245 + GFF2618 0.82 +0.6
302,245 + GFF2618 0.82 +0.3
302,245 + GFF2618 0.82 +0.1
302,245 + GFF2618 0.82 -0.8
302,246 - GFF2618 0.82 -0.2
302,246 - GFF2618 0.82 +0.3
302,246 - GFF2618 0.82 -0.0
302,246 - GFF2618 0.82 -0.1
302,248 + GFF2618 0.82 +0.5
302,248 + GFF2618 0.82 -0.1
302,248 + GFF2618 0.82 -3.8
302,249 - GFF2618 0.82 +0.7
302,529 + +0.8
302,529 + +0.3
302,530 - +1.2
302,530 - -1.6
302,530 - -0.0
302,530 - -1.4
302,530 - -0.5
302,530 - +1.4
302,640 + -1.2
302,641 - -2.0
302,641 - +0.3
302,641 - -0.2
302,676 + GFF2619 0.17 -0.8
302,676 + GFF2619 0.17 -0.5
302,677 - GFF2619 0.17 +0.1
302,677 - GFF2619 0.17 -0.2
302,677 - GFF2619 0.17 -0.2
302,835 + GFF2619 0.54 -0.4
302,860 + GFF2619 0.60 -0.3
302,861 - GFF2619 0.60 -0.8
302,861 - GFF2619 0.60 +0.1
302,937 + GFF2619 0.78 -0.3
302,937 + GFF2619 0.78 +0.3
302,937 + GFF2619 0.78 -0.8
302,937 + GFF2619 0.78 +0.6
302,938 - GFF2619 0.78 +0.2
303,028 - -0.7
303,028 - +1.4
303,034 + +0.1
303,035 - +1.1
303,253 + -0.3
303,258 + +0.5
303,269 + -0.8
303,269 + +0.4
303,270 - +0.0
303,270 - -0.2
303,280 + +0.4
303,280 + -1.8
303,280 + +0.1
303,280 + -0.2
303,280 + -0.1
303,280 + +0.9
303,281 - +1.6
303,281 - +0.2
303,293 + -0.1
303,293 + +1.9
303,293 + +0.7
303,294 - +0.7
303,294 - +0.3
303,294 - +0.3
303,413 + +0.3
303,452 + -0.5
303,453 - +0.3
303,453 - +0.6
303,453 - -0.9
303,460 - -0.4
303,574 + GFF2620 0.24 +0.0
303,574 + GFF2620 0.24 -0.6
303,574 + GFF2620 0.24 -1.4
303,574 + GFF2620 0.24 +0.4
303,575 - GFF2620 0.24 -1.1
303,575 - GFF2620 0.24 -0.5
303,645 + GFF2620 0.35 +1.0
303,646 - GFF2620 0.35 -0.8
303,672 + GFF2620 0.39 +1.0
303,672 + GFF2620 0.39 +0.1
303,672 + GFF2620 0.39 +0.9
303,672 + GFF2620 0.39 +0.4
303,672 + GFF2620 0.39 +1.1
303,672 + GFF2620 0.39 +0.2
303,673 - GFF2620 0.39 +0.5
303,673 - GFF2620 0.39 +0.9
303,730 + GFF2620 0.47 +0.2
303,730 + GFF2620 0.47 +0.9
303,731 - GFF2620 0.48 +0.1
303,787 + GFF2620 0.56 +0.6
303,787 + GFF2620 0.56 +0.3
303,788 - GFF2620 0.56 -0.3
303,820 + GFF2620 0.61 +0.7
303,821 - GFF2620 0.61 +0.6
303,856 + GFF2620 0.67 +1.0
303,878 - GFF2620 0.70 +0.2
303,878 - GFF2620 0.70 -0.3
303,878 - GFF2620 0.70 -0.0
303,997 + GFF2620 0.88 +0.3
303,997 + GFF2620 0.88 -0.4
303,997 + GFF2620 0.88 -1.0
303,998 - GFF2620 0.88 +1.3
304,021 + +0.6
304,021 + +0.6
304,021 + +0.3
304,021 + +0.1
304,021 + -0.1
304,021 + +0.3
304,021 + -0.5

Or see this region's nucleotide sequence