Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF260 and GFF261 are separated by 133 nucleotides GFF261 and GFF262 are separated by 197 nucleotides GFF262 and GFF263 are separated by 63 nucleotides
GFF260 - hypothetical protein, at 274,863 to 276,071
GFF260
GFF261 - Alpha-keto acid-binding periplasmic protein TakP, at 276,205 to 277,299
GFF261
GFF262 - hypothetical protein, at 277,497 to 278,051
GFF262
GFF263 - hypothetical protein, at 278,115 to 278,846
GFF263
Position (kb) 276
277
278 Strain fitness (log2 ratio) -1
0
1 at 276.119 kb on - strand at 276.119 kb on - strand at 276.248 kb on + strand at 276.347 kb on + strand, within GFF261 at 276.369 kb on - strand, within GFF261 at 276.459 kb on - strand, within GFF261 at 276.459 kb on - strand, within GFF261 at 276.515 kb on + strand, within GFF261 at 276.516 kb on - strand, within GFF261 at 276.593 kb on + strand, within GFF261 at 276.594 kb on - strand, within GFF261 at 276.596 kb on + strand, within GFF261 at 276.596 kb on + strand, within GFF261 at 276.596 kb on + strand, within GFF261 at 276.597 kb on - strand, within GFF261 at 276.600 kb on - strand, within GFF261 at 276.602 kb on + strand, within GFF261 at 276.602 kb on + strand, within GFF261 at 276.602 kb on + strand, within GFF261 at 276.642 kb on - strand, within GFF261 at 276.870 kb on - strand, within GFF261 at 276.995 kb on + strand, within GFF261 at 276.996 kb on - strand, within GFF261 at 277.001 kb on + strand, within GFF261 at 277.001 kb on + strand, within GFF261 at 277.001 kb on + strand, within GFF261 at 277.001 kb on + strand, within GFF261 at 277.127 kb on + strand, within GFF261 at 277.127 kb on + strand, within GFF261 at 277.128 kb on - strand, within GFF261 at 277.128 kb on - strand, within GFF261 at 277.331 kb on + strand at 277.332 kb on - strand at 277.332 kb on - strand at 277.332 kb on - strand at 277.420 kb on - strand at 277.420 kb on - strand at 277.456 kb on + strand at 277.457 kb on - strand at 277.457 kb on - strand at 277.457 kb on - strand at 277.722 kb on + strand, within GFF262 at 277.723 kb on - strand, within GFF262 at 277.933 kb on - strand, within GFF262 at 278.016 kb on - strand at 278.149 kb on + strand at 278.150 kb on - strand at 278.297 kb on - strand, within GFF263 at 278.297 kb on - strand, within GFF263 at 278.297 kb on - strand, within GFF263
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 276,119 - +0.4 276,119 - -0.3 276,248 + +0.4 276,347 + GFF261 0.13 -1.1 276,369 - GFF261 0.15 +1.2 276,459 - GFF261 0.23 -0.2 276,459 - GFF261 0.23 -0.3 276,515 + GFF261 0.28 -0.1 276,516 - GFF261 0.28 -0.1 276,593 + GFF261 0.35 +0.7 276,594 - GFF261 0.36 +0.9 276,596 + GFF261 0.36 +1.1 276,596 + GFF261 0.36 -0.3 276,596 + GFF261 0.36 +0.7 276,597 - GFF261 0.36 +0.2 276,600 - GFF261 0.36 +0.4 276,602 + GFF261 0.36 -0.2 276,602 + GFF261 0.36 +0.3 276,602 + GFF261 0.36 -0.9 276,642 - GFF261 0.40 +0.1 276,870 - GFF261 0.61 -0.3 276,995 + GFF261 0.72 +0.5 276,996 - GFF261 0.72 +0.5 277,001 + GFF261 0.73 +0.1 277,001 + GFF261 0.73 -0.0 277,001 + GFF261 0.73 -0.0 277,001 + GFF261 0.73 +0.4 277,127 + GFF261 0.84 +0.6 277,127 + GFF261 0.84 +0.3 277,128 - GFF261 0.84 -0.3 277,128 - GFF261 0.84 +0.0 277,331 + +0.8 277,332 - -0.8 277,332 - -1.4 277,332 - -0.6 277,420 - -0.2 277,420 - -1.3 277,456 + -0.3 277,457 - +0.5 277,457 - -0.6 277,457 - -1.6 277,722 + GFF262 0.41 +0.7 277,723 - GFF262 0.41 +0.4 277,933 - GFF262 0.79 +0.3 278,016 - -0.0 278,149 + +0.7 278,150 - +0.1 278,297 - GFF263 0.25 +0.6 278,297 - GFF263 0.25 -0.2 278,297 - GFF263 0.25 +0.1
Or see this region's nucleotide sequence