Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2601 and GFF2602 are separated by 90 nucleotides GFF2602 and GFF2603 are separated by 337 nucleotides
GFF2601 - Nucleoid occlusion protein, at 286,262 to 288,325
GFF2601
GFF2602 - hypothetical protein, at 288,416 to 289,453
GFF2602
GFF2603 - hypothetical protein, at 289,791 to 290,714
GFF2603
Position (kb) 288
289
290 Strain fitness (log2 ratio) -1
0
1
2 at 287.480 kb on - strand, within GFF2601 at 287.480 kb on - strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.693 kb on + strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.694 kb on - strand, within GFF2601 at 287.699 kb on + strand, within GFF2601 at 287.699 kb on + strand, within GFF2601 at 288.281 kb on - strand at 288.324 kb on - strand at 288.482 kb on + strand at 288.482 kb on + strand at 288.482 kb on + strand at 288.482 kb on + strand at 288.483 kb on - strand at 288.512 kb on + strand at 288.512 kb on + strand at 288.512 kb on + strand at 288.512 kb on + strand at 288.512 kb on + strand at 288.513 kb on - strand at 288.513 kb on - strand at 288.703 kb on + strand, within GFF2602 at 288.832 kb on - strand, within GFF2602 at 288.840 kb on - strand, within GFF2602 at 288.840 kb on - strand, within GFF2602 at 288.840 kb on - strand, within GFF2602 at 288.905 kb on + strand, within GFF2602 at 288.905 kb on + strand, within GFF2602 at 288.905 kb on + strand, within GFF2602 at 288.905 kb on + strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.906 kb on - strand, within GFF2602 at 288.908 kb on + strand, within GFF2602 at 288.909 kb on - strand, within GFF2602 at 288.985 kb on + strand, within GFF2602 at 289.042 kb on + strand, within GFF2602 at 289.042 kb on + strand, within GFF2602 at 289.042 kb on + strand, within GFF2602 at 289.238 kb on + strand, within GFF2602 at 289.238 kb on + strand, within GFF2602 at 289.238 kb on + strand, within GFF2602 at 289.238 kb on + strand, within GFF2602 at 289.239 kb on - strand, within GFF2602 at 289.239 kb on - strand, within GFF2602 at 289.370 kb on + strand at 289.943 kb on + strand, within GFF2603
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 287,480 - GFF2601 0.59 +0.5 287,480 - GFF2601 0.59 -0.4 287,693 + GFF2601 0.69 -0.9 287,693 + GFF2601 0.69 -0.9 287,693 + GFF2601 0.69 -0.7 287,693 + GFF2601 0.69 -0.6 287,693 + GFF2601 0.69 -0.5 287,693 + GFF2601 0.69 -0.6 287,693 + GFF2601 0.69 -0.3 287,694 - GFF2601 0.69 -0.1 287,694 - GFF2601 0.69 +0.7 287,694 - GFF2601 0.69 -0.8 287,694 - GFF2601 0.69 -0.2 287,694 - GFF2601 0.69 +0.7 287,694 - GFF2601 0.69 +0.2 287,694 - GFF2601 0.69 -1.0 287,694 - GFF2601 0.69 -1.6 287,699 + GFF2601 0.70 -0.2 287,699 + GFF2601 0.70 +0.0 288,281 - +0.0 288,324 - +0.7 288,482 + -0.4 288,482 + -0.4 288,482 + +0.4 288,482 + +1.3 288,483 - -0.2 288,512 + +0.0 288,512 + -0.4 288,512 + +0.1 288,512 + +0.6 288,512 + +0.0 288,513 - -0.4 288,513 - +0.1 288,703 + GFF2602 0.28 -0.1 288,832 - GFF2602 0.40 -0.0 288,840 - GFF2602 0.41 +0.3 288,840 - GFF2602 0.41 -1.1 288,840 - GFF2602 0.41 +1.1 288,905 + GFF2602 0.47 -0.2 288,905 + GFF2602 0.47 +0.5 288,905 + GFF2602 0.47 -0.9 288,905 + GFF2602 0.47 +0.2 288,906 - GFF2602 0.47 -0.2 288,906 - GFF2602 0.47 +1.0 288,906 - GFF2602 0.47 +0.1 288,906 - GFF2602 0.47 -0.2 288,906 - GFF2602 0.47 -1.0 288,906 - GFF2602 0.47 -0.5 288,906 - GFF2602 0.47 -0.2 288,908 + GFF2602 0.47 +0.7 288,909 - GFF2602 0.47 +2.0 288,985 + GFF2602 0.55 +1.6 289,042 + GFF2602 0.60 +0.1 289,042 + GFF2602 0.60 +0.3 289,042 + GFF2602 0.60 -0.3 289,238 + GFF2602 0.79 -0.7 289,238 + GFF2602 0.79 -1.1 289,238 + GFF2602 0.79 +0.3 289,238 + GFF2602 0.79 +0.4 289,239 - GFF2602 0.79 -0.4 289,239 - GFF2602 0.79 +0.3 289,370 + -0.7 289,943 + GFF2603 0.16 +1.0
Or see this region's nucleotide sequence