Strain Fitness in Xanthobacter sp. DMC5 around GFF2591

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2589 and GFF2590 overlap by 14 nucleotidesGFF2590 and GFF2591 overlap by 8 nucleotidesGFF2591 and GFF2592 are separated by 2 nucleotidesGFF2592 and GFF2593 are separated by 92 nucleotides GFF2589 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 272,163 to 272,861 GFF2589 GFF2590 - Linearmycin resistance ATP-binding protein LnrL, at 272,848 to 273,582 GFF2590 GFF2591 - hypothetical protein, at 273,575 to 274,612 GFF2591 GFF2592 - High-affinity branched-chain amino acid transport system permease protein LivH, at 274,615 to 275,514 GFF2592 GFF2593 - hypothetical protein, at 275,607 to 275,987 GFF2593 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 272.588 kb on + strand, within GFF2589at 272.588 kb on + strand, within GFF2589at 272.589 kb on - strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.700 kb on + strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.878 kb on + strandat 272.878 kb on + strandat 272.878 kb on + strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.956 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590at 273.312 kb on + strand, within GFF2590at 273.312 kb on + strand, within GFF2590at 273.313 kb on - strand, within GFF2590at 273.313 kb on - strand, within GFF2590at 273.385 kb on - strand, within GFF2590at 273.385 kb on - strand, within GFF2590at 273.539 kb on + strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.723 kb on + strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 273.951 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.008 kb on + strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.009 kb on - strand, within GFF2591at 274.052 kb on + strand, within GFF2591at 274.055 kb on + strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.072 kb on - strand, within GFF2591at 274.100 kb on + strand, within GFF2591at 274.100 kb on + strand, within GFF2591at 274.101 kb on - strand, within GFF2591at 274.101 kb on - strand, within GFF2591at 274.248 kb on + strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.249 kb on - strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.260 kb on + strand, within GFF2591at 274.261 kb on - strand, within GFF2591at 274.261 kb on - strand, within GFF2591at 274.359 kb on + strand, within GFF2591at 274.360 kb on - strand, within GFF2591at 274.397 kb on - strand, within GFF2591at 274.397 kb on - strand, within GFF2591at 274.428 kb on + strand, within GFF2591at 274.428 kb on + strand, within GFF2591at 274.428 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.429 kb on - strand, within GFF2591at 274.482 kb on + strand, within GFF2591at 274.482 kb on + strand, within GFF2591at 274.483 kb on - strand, within GFF2591at 274.483 kb on - strand, within GFF2591at 274.739 kb on + strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.740 kb on - strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.844 kb on + strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 274.845 kb on - strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.002 kb on + strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.003 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.221 kb on - strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.254 kb on + strand, within GFF2592at 275.255 kb on - strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.471 kb on - strandat 275.471 kb on - strandat 275.474 kb on + strandat 275.475 kb on - strandat 275.525 kb on + strandat 275.526 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
272,588 + GFF2589 0.61 +0.1
272,588 + GFF2589 0.61 -0.6
272,589 - GFF2589 0.61 +0.7
272,623 + GFF2589 0.66 -0.0
272,623 + GFF2589 0.66 -1.4
272,624 - GFF2589 0.66 +1.6
272,624 - GFF2589 0.66 -0.5
272,624 - GFF2589 0.66 +0.5
272,624 - GFF2589 0.66 +0.9
272,624 - GFF2589 0.66 -1.1
272,700 + GFF2589 0.77 -1.0
272,701 - GFF2589 0.77 -0.7
272,701 - GFF2589 0.77 -0.1
272,701 - GFF2589 0.77 -0.8
272,878 + -0.2
272,878 + -0.0
272,878 + -0.2
272,879 - -1.7
272,879 - -0.7
272,879 - -1.7
272,879 - -0.3
272,879 - -0.8
272,879 - -0.3
272,879 - +0.7
272,879 - -0.5
272,879 - -0.3
272,882 + +0.3
272,882 + +0.3
272,882 + -0.1
272,883 - -0.3
272,883 - +0.5
272,883 - +0.5
272,883 - -1.7
272,883 - +0.3
272,883 - -1.5
272,956 + GFF2590 0.15 +0.2
273,040 + GFF2590 0.26 -0.2
273,040 + GFF2590 0.26 -0.0
273,312 + GFF2590 0.63 -0.7
273,312 + GFF2590 0.63 +0.2
273,313 - GFF2590 0.63 -1.7
273,313 - GFF2590 0.63 +0.1
273,385 - GFF2590 0.73 -0.7
273,385 - GFF2590 0.73 -0.3
273,539 + +2.2
273,540 - -1.0
273,540 - -0.8
273,723 + GFF2591 0.14 -1.0
273,724 - GFF2591 0.14 -0.9
273,724 - GFF2591 0.14 -1.1
273,724 - GFF2591 0.14 -2.1
273,724 - GFF2591 0.14 +0.7
273,951 + GFF2591 0.36 +0.0
273,951 + GFF2591 0.36 +0.6
273,951 + GFF2591 0.36 -0.7
274,008 + GFF2591 0.42 -0.6
274,008 + GFF2591 0.42 +0.4
274,008 + GFF2591 0.42 -0.7
274,008 + GFF2591 0.42 +0.1
274,008 + GFF2591 0.42 -0.2
274,008 + GFF2591 0.42 -0.3
274,009 - GFF2591 0.42 +0.6
274,009 - GFF2591 0.42 +0.4
274,009 - GFF2591 0.42 -0.6
274,009 - GFF2591 0.42 +1.6
274,009 - GFF2591 0.42 +0.8
274,052 + GFF2591 0.46 -0.6
274,055 + GFF2591 0.46 -2.4
274,072 - GFF2591 0.48 +0.4
274,072 - GFF2591 0.48 +0.2
274,072 - GFF2591 0.48 -0.3
274,072 - GFF2591 0.48 +0.0
274,100 + GFF2591 0.51 -0.9
274,100 + GFF2591 0.51 -0.4
274,101 - GFF2591 0.51 +1.6
274,101 - GFF2591 0.51 -1.5
274,248 + GFF2591 0.65 +0.2
274,249 - GFF2591 0.65 -0.5
274,249 - GFF2591 0.65 -0.2
274,249 - GFF2591 0.65 -0.6
274,249 - GFF2591 0.65 -0.9
274,260 + GFF2591 0.66 -0.4
274,260 + GFF2591 0.66 +0.0
274,260 + GFF2591 0.66 -0.7
274,261 - GFF2591 0.66 -0.1
274,261 - GFF2591 0.66 -0.7
274,359 + GFF2591 0.76 +0.2
274,360 - GFF2591 0.76 -0.8
274,397 - GFF2591 0.79 -1.7
274,397 - GFF2591 0.79 +0.2
274,428 + GFF2591 0.82 -0.2
274,428 + GFF2591 0.82 +0.0
274,428 - GFF2591 0.82 -2.7
274,429 - GFF2591 0.82 +0.3
274,429 - GFF2591 0.82 +0.1
274,429 - GFF2591 0.82 -0.9
274,482 + GFF2591 0.87 +0.5
274,482 + GFF2591 0.87 -0.2
274,483 - GFF2591 0.87 +0.1
274,483 - GFF2591 0.87 +0.1
274,739 + GFF2592 0.14 +0.0
274,740 - GFF2592 0.14 +1.0
274,740 - GFF2592 0.14 +0.6
274,740 - GFF2592 0.14 -0.3
274,740 - GFF2592 0.14 +0.4
274,844 + GFF2592 0.25 -1.2
274,844 + GFF2592 0.25 -0.0
274,845 - GFF2592 0.26 +0.1
274,845 - GFF2592 0.26 +1.2
275,002 + GFF2592 0.43 +0.1
275,002 + GFF2592 0.43 -0.4
275,002 + GFF2592 0.43 -0.9
275,002 + GFF2592 0.43 +0.1
275,003 - GFF2592 0.43 -1.1
275,003 - GFF2592 0.43 +0.3
275,003 - GFF2592 0.43 +0.3
275,003 - GFF2592 0.43 -0.4
275,088 - GFF2592 0.53 -0.7
275,088 - GFF2592 0.53 -2.0
275,088 - GFF2592 0.53 -0.6
275,096 + GFF2592 0.53 +0.4
275,096 + GFF2592 0.53 -0.5
275,220 + GFF2592 0.67 +1.1
275,220 + GFF2592 0.67 +0.5
275,221 - GFF2592 0.67 -0.4
275,237 + GFF2592 0.69 +0.9
275,237 + GFF2592 0.69 -0.1
275,238 - GFF2592 0.69 -1.0
275,238 - GFF2592 0.69 +0.0
275,238 - GFF2592 0.69 -0.1
275,238 - GFF2592 0.69 +0.1
275,238 - GFF2592 0.69 -0.4
275,254 + GFF2592 0.71 +0.2
275,255 - GFF2592 0.71 -0.0
275,372 + GFF2592 0.84 +0.1
275,372 + GFF2592 0.84 -1.7
275,373 - GFF2592 0.84 +1.6
275,373 - GFF2592 0.84 -0.4
275,373 - GFF2592 0.84 -0.3
275,373 - GFF2592 0.84 +0.2
275,471 - +0.0
275,471 - +0.2
275,474 + -0.1
275,475 - -0.1
275,525 + +0.5
275,526 - -0.7

Or see this region's nucleotide sequence