Strain Fitness in Xanthobacter sp. DMC5 around GFF2589

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2588 and GFF2589 are separated by 19 nucleotidesGFF2589 and GFF2590 overlap by 14 nucleotidesGFF2590 and GFF2591 overlap by 8 nucleotides GFF2588 - Aliphatic amidase expression-regulating protein, at 270,953 to 272,143 GFF2588 GFF2589 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 272,163 to 272,861 GFF2589 GFF2590 - Linearmycin resistance ATP-binding protein LnrL, at 272,848 to 273,582 GFF2590 GFF2591 - hypothetical protein, at 273,575 to 274,612 GFF2591 Position (kb) 272 273Strain fitness (log2 ratio) -2 -1 0 1 2at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.311 kb on + strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.417 kb on - strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.565 kb on + strand, within GFF2588at 271.635 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.747 kb on - strand, within GFF2588at 271.747 kb on - strand, within GFF2588at 271.891 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 271.983 kb on + strand, within GFF2588at 272.509 kb on + strand, within GFF2589at 272.509 kb on + strand, within GFF2589at 272.510 kb on - strand, within GFF2589at 272.510 kb on - strand, within GFF2589at 272.531 kb on + strand, within GFF2589at 272.588 kb on + strand, within GFF2589at 272.588 kb on + strand, within GFF2589at 272.589 kb on - strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.623 kb on + strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.624 kb on - strand, within GFF2589at 272.700 kb on + strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.701 kb on - strand, within GFF2589at 272.878 kb on + strandat 272.878 kb on + strandat 272.878 kb on + strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.879 kb on - strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.882 kb on + strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.883 kb on - strandat 272.956 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590at 273.040 kb on + strand, within GFF2590at 273.312 kb on + strand, within GFF2590at 273.312 kb on + strand, within GFF2590at 273.313 kb on - strand, within GFF2590at 273.313 kb on - strand, within GFF2590at 273.385 kb on - strand, within GFF2590at 273.385 kb on - strand, within GFF2590at 273.539 kb on + strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.723 kb on + strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591at 273.724 kb on - strand, within GFF2591

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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271,185 + GFF2588 0.19 +0.3
271,185 + GFF2588 0.19 -0.3
271,185 + GFF2588 0.19 +1.6
271,185 + GFF2588 0.19 -0.2
271,185 + GFF2588 0.19 -0.1
271,185 + GFF2588 0.19 +0.6
271,185 + GFF2588 0.19 +0.1
271,185 + GFF2588 0.19 -0.4
271,185 + GFF2588 0.19 -0.5
271,185 + GFF2588 0.19 +0.2
271,185 + GFF2588 0.19 +0.2
271,185 + GFF2588 0.19 +0.0
271,186 - GFF2588 0.20 -0.1
271,186 - GFF2588 0.20 +0.6
271,186 - GFF2588 0.20 -0.4
271,186 - GFF2588 0.20 -0.5
271,186 - GFF2588 0.20 -1.3
271,186 - GFF2588 0.20 -0.8
271,186 - GFF2588 0.20 +0.4
271,186 - GFF2588 0.20 -0.4
271,186 - GFF2588 0.20 +1.0
271,186 - GFF2588 0.20 -0.2
271,186 - GFF2588 0.20 +1.3
271,186 - GFF2588 0.20 -0.4
271,263 + GFF2588 0.26 +0.3
271,263 + GFF2588 0.26 -0.4
271,263 + GFF2588 0.26 -0.5
271,263 + GFF2588 0.26 -0.3
271,263 + GFF2588 0.26 -0.0
271,264 - GFF2588 0.26 -0.2
271,264 - GFF2588 0.26 -0.0
271,264 - GFF2588 0.26 -0.8
271,311 + GFF2588 0.30 +0.4
271,312 - GFF2588 0.30 -0.6
271,312 - GFF2588 0.30 -0.6
271,312 - GFF2588 0.30 +0.4
271,416 + GFF2588 0.39 -0.6
271,416 + GFF2588 0.39 +0.1
271,416 + GFF2588 0.39 -0.4
271,417 - GFF2588 0.39 -1.0
271,530 + GFF2588 0.48 -0.0
271,530 + GFF2588 0.48 +0.6
271,530 + GFF2588 0.48 -0.0
271,530 + GFF2588 0.48 -0.0
271,531 - GFF2588 0.49 +0.0
271,531 - GFF2588 0.49 +1.2
271,565 + GFF2588 0.51 +0.2
271,635 + GFF2588 0.57 +0.8
271,746 + GFF2588 0.67 +0.4
271,746 + GFF2588 0.67 -0.3
271,746 + GFF2588 0.67 +0.1
271,746 + GFF2588 0.67 -1.3
271,746 + GFF2588 0.67 -1.3
271,746 + GFF2588 0.67 -1.5
271,747 - GFF2588 0.67 +0.3
271,747 - GFF2588 0.67 -0.7
271,891 + GFF2588 0.79 -0.1
271,983 + GFF2588 0.86 -0.5
271,983 + GFF2588 0.86 +1.1
271,983 + GFF2588 0.86 +0.3
271,983 + GFF2588 0.86 +0.1
272,509 + GFF2589 0.49 -0.0
272,509 + GFF2589 0.49 +0.1
272,510 - GFF2589 0.50 +0.1
272,510 - GFF2589 0.50 -0.3
272,531 + GFF2589 0.53 -0.4
272,588 + GFF2589 0.61 +0.1
272,588 + GFF2589 0.61 -0.6
272,589 - GFF2589 0.61 +0.7
272,623 + GFF2589 0.66 -0.0
272,623 + GFF2589 0.66 -1.4
272,624 - GFF2589 0.66 +1.6
272,624 - GFF2589 0.66 -0.5
272,624 - GFF2589 0.66 +0.5
272,624 - GFF2589 0.66 +0.9
272,624 - GFF2589 0.66 -1.1
272,700 + GFF2589 0.77 -1.0
272,701 - GFF2589 0.77 -0.7
272,701 - GFF2589 0.77 -0.1
272,701 - GFF2589 0.77 -0.8
272,878 + -0.2
272,878 + -0.0
272,878 + -0.2
272,879 - -1.7
272,879 - -0.7
272,879 - -1.7
272,879 - -0.3
272,879 - -0.8
272,879 - -0.3
272,879 - +0.7
272,879 - -0.5
272,879 - -0.3
272,882 + +0.3
272,882 + +0.3
272,882 + -0.1
272,883 - -0.3
272,883 - +0.5
272,883 - +0.5
272,883 - -1.7
272,883 - +0.3
272,883 - -1.5
272,956 + GFF2590 0.15 +0.2
273,040 + GFF2590 0.26 -0.2
273,040 + GFF2590 0.26 -0.0
273,312 + GFF2590 0.63 -0.7
273,312 + GFF2590 0.63 +0.2
273,313 - GFF2590 0.63 -1.7
273,313 - GFF2590 0.63 +0.1
273,385 - GFF2590 0.73 -0.7
273,385 - GFF2590 0.73 -0.3
273,539 + +2.2
273,540 - -1.0
273,540 - -0.8
273,723 + GFF2591 0.14 -1.0
273,724 - GFF2591 0.14 -0.9
273,724 - GFF2591 0.14 -1.1
273,724 - GFF2591 0.14 -2.1
273,724 - GFF2591 0.14 +0.7

Or see this region's nucleotide sequence