Strain Fitness in Xanthobacter sp. DMC5 around GFF2584

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2583 and GFF2584 are separated by 557 nucleotidesGFF2584 and GFF2585 are separated by 126 nucleotides GFF2583 - hypothetical protein, at 264,783 to 265,688 GFF2583 GFF2584 - hypothetical protein, at 266,246 to 267,316 GFF2584 GFF2585 - Acylamidase, at 267,443 to 268,873 GFF2585 Position (kb) 266 267 268Strain fitness (log2 ratio) -2 -1 0 1at 265.437 kb on - strand, within GFF2583at 265.437 kb on - strand, within GFF2583at 265.556 kb on + strand, within GFF2583at 265.556 kb on + strand, within GFF2583at 265.557 kb on - strand, within GFF2583at 265.557 kb on - strand, within GFF2583at 265.568 kb on + strand, within GFF2583at 265.568 kb on + strand, within GFF2583at 265.569 kb on - strand, within GFF2583at 265.569 kb on - strand, within GFF2583at 265.569 kb on - strand, within GFF2583at 265.572 kb on + strand, within GFF2583at 265.573 kb on - strand, within GFF2583at 265.573 kb on - strand, within GFF2583at 265.573 kb on - strand, within GFF2583at 265.573 kb on - strand, within GFF2583at 265.615 kb on + strandat 265.615 kb on + strandat 265.616 kb on - strandat 265.616 kb on - strandat 265.616 kb on - strandat 265.686 kb on + strandat 265.687 kb on - strandat 265.687 kb on - strandat 265.687 kb on - strandat 265.703 kb on + strandat 265.703 kb on + strandat 265.704 kb on - strandat 265.704 kb on - strandat 265.704 kb on - strandat 265.704 kb on - strandat 265.821 kb on + strandat 265.821 kb on + strandat 265.822 kb on - strandat 265.822 kb on - strandat 265.822 kb on - strandat 265.870 kb on + strandat 265.870 kb on + strandat 265.870 kb on + strandat 265.871 kb on - strandat 265.871 kb on - strandat 265.987 kb on - strandat 265.996 kb on + strandat 265.996 kb on + strandat 266.173 kb on + strandat 266.181 kb on + strandat 266.242 kb on + strandat 266.248 kb on - strandat 266.277 kb on + strandat 266.277 kb on + strandat 266.277 kb on + strandat 266.278 kb on - strandat 266.284 kb on + strandat 266.320 kb on + strandat 266.320 kb on + strandat 266.320 kb on + strandat 266.321 kb on - strandat 266.322 kb on + strandat 266.325 kb on + strandat 266.325 kb on + strandat 266.326 kb on - strandat 266.355 kb on + strand, within GFF2584at 266.388 kb on + strand, within GFF2584at 266.388 kb on + strand, within GFF2584at 266.388 kb on + strand, within GFF2584at 266.388 kb on + strand, within GFF2584at 266.388 kb on + strand, within GFF2584at 266.389 kb on - strand, within GFF2584at 266.389 kb on - strand, within GFF2584at 266.389 kb on - strand, within GFF2584at 266.484 kb on + strand, within GFF2584at 266.484 kb on + strand, within GFF2584at 266.484 kb on + strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.487 kb on + strand, within GFF2584at 266.488 kb on - strand, within GFF2584at 266.488 kb on - strand, within GFF2584at 266.526 kb on - strand, within GFF2584at 266.552 kb on - strand, within GFF2584at 266.565 kb on + strand, within GFF2584at 266.566 kb on - strand, within GFF2584at 266.566 kb on - strand, within GFF2584at 266.637 kb on + strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.676 kb on + strand, within GFF2584at 266.677 kb on - strand, within GFF2584at 266.677 kb on - strand, within GFF2584at 266.680 kb on + strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.722 kb on + strand, within GFF2584at 266.757 kb on + strand, within GFF2584at 266.757 kb on + strand, within GFF2584at 266.775 kb on + strand, within GFF2584at 266.776 kb on - strand, within GFF2584at 266.842 kb on + strand, within GFF2584at 266.872 kb on - strand, within GFF2584at 266.872 kb on - strand, within GFF2584at 266.957 kb on + strand, within GFF2584at 266.968 kb on - strand, within GFF2584at 266.991 kb on + strand, within GFF2584at 266.991 kb on + strand, within GFF2584at 266.992 kb on - strand, within GFF2584at 267.002 kb on + strand, within GFF2584at 267.002 kb on + strand, within GFF2584at 267.111 kb on + strand, within GFF2584at 267.111 kb on + strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.114 kb on + strand, within GFF2584at 267.115 kb on - strand, within GFF2584at 267.135 kb on + strand, within GFF2584at 267.135 kb on + strand, within GFF2584at 267.136 kb on - strand, within GFF2584at 267.179 kb on - strand, within GFF2584at 267.179 kb on - strand, within GFF2584at 267.193 kb on - strand, within GFF2584at 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.309 kb on - strandat 267.309 kb on - strandat 267.309 kb on - strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.808 kb on - strand, within GFF2585at 268.044 kb on + strand, within GFF2585at 268.090 kb on + strand, within GFF2585at 268.090 kb on + strand, within GFF2585at 268.135 kb on + strand, within GFF2585at 268.136 kb on - strand, within GFF2585at 268.164 kb on - strand, within GFF2585at 268.200 kb on - strand, within GFF2585at 268.200 kb on - strand, within GFF2585at 268.262 kb on + strand, within GFF2585at 268.290 kb on + strand, within GFF2585at 268.291 kb on - strand, within GFF2585at 268.291 kb on - strand, within GFF2585at 268.291 kb on - strand, within GFF2585

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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265,437 - GFF2583 0.72 +0.2
265,437 - GFF2583 0.72 +1.4
265,556 + GFF2583 0.85 +0.3
265,556 + GFF2583 0.85 -0.1
265,557 - GFF2583 0.85 +0.1
265,557 - GFF2583 0.85 -0.3
265,568 + GFF2583 0.87 +0.2
265,568 + GFF2583 0.87 -0.2
265,569 - GFF2583 0.87 +0.2
265,569 - GFF2583 0.87 +0.8
265,569 - GFF2583 0.87 +0.1
265,572 + GFF2583 0.87 -0.1
265,573 - GFF2583 0.87 -0.1
265,573 - GFF2583 0.87 -0.6
265,573 - GFF2583 0.87 -0.5
265,573 - GFF2583 0.87 +0.3
265,615 + +0.3
265,615 + +0.3
265,616 - -0.1
265,616 - -0.7
265,616 - -0.9
265,686 + +0.1
265,687 - -0.4
265,687 - +0.6
265,687 - +0.7
265,703 + -0.4
265,703 + -1.7
265,704 - +0.8
265,704 - +1.3
265,704 - -0.9
265,704 - +0.0
265,821 + -0.1
265,821 + +0.1
265,822 - +0.2
265,822 - -0.3
265,822 - -0.7
265,870 + +0.5
265,870 + -1.0
265,870 + -0.6
265,871 - +1.1
265,871 - -0.0
265,987 - -0.9
265,996 + +1.1
265,996 + +0.6
266,173 + -0.4
266,181 + +0.6
266,242 + -0.1
266,248 - -0.3
266,277 + -0.1
266,277 + -0.1
266,277 + +0.2
266,278 - +0.7
266,284 + -0.4
266,320 + +0.1
266,320 + -0.3
266,320 + -0.2
266,321 - -0.4
266,322 + +0.4
266,325 + +0.6
266,325 + -1.3
266,326 - -0.1
266,355 + GFF2584 0.10 -0.4
266,388 + GFF2584 0.13 +1.6
266,388 + GFF2584 0.13 +0.4
266,388 + GFF2584 0.13 +0.4
266,388 + GFF2584 0.13 -0.1
266,388 + GFF2584 0.13 -0.3
266,389 - GFF2584 0.13 -1.4
266,389 - GFF2584 0.13 -0.3
266,389 - GFF2584 0.13 -0.9
266,484 + GFF2584 0.22 +0.0
266,484 + GFF2584 0.22 +0.2
266,484 + GFF2584 0.22 +0.7
266,485 - GFF2584 0.22 -0.3
266,485 - GFF2584 0.22 +0.1
266,485 - GFF2584 0.22 +0.2
266,487 + GFF2584 0.23 -0.1
266,488 - GFF2584 0.23 -2.7
266,488 - GFF2584 0.23 +0.4
266,526 - GFF2584 0.26 +0.6
266,552 - GFF2584 0.29 +0.3
266,565 + GFF2584 0.30 -0.1
266,566 - GFF2584 0.30 -0.1
266,566 - GFF2584 0.30 +0.0
266,637 + GFF2584 0.37 -0.6
266,638 - GFF2584 0.37 +0.3
266,638 - GFF2584 0.37 +0.6
266,638 - GFF2584 0.37 +0.3
266,676 + GFF2584 0.40 +0.6
266,677 - GFF2584 0.40 +0.3
266,677 - GFF2584 0.40 +0.6
266,680 + GFF2584 0.41 +0.7
266,681 - GFF2584 0.41 -0.1
266,681 - GFF2584 0.41 +0.3
266,681 - GFF2584 0.41 +0.3
266,681 - GFF2584 0.41 +0.8
266,681 - GFF2584 0.41 +0.5
266,681 - GFF2584 0.41 -0.1
266,722 + GFF2584 0.44 +0.1
266,757 + GFF2584 0.48 -0.2
266,757 + GFF2584 0.48 -0.4
266,775 + GFF2584 0.49 +0.0
266,776 - GFF2584 0.49 -1.3
266,842 + GFF2584 0.56 +0.4
266,872 - GFF2584 0.58 +0.2
266,872 - GFF2584 0.58 +0.6
266,957 + GFF2584 0.66 +0.6
266,968 - GFF2584 0.67 +0.1
266,991 + GFF2584 0.70 +0.6
266,991 + GFF2584 0.70 -0.7
266,992 - GFF2584 0.70 -0.0
267,002 + GFF2584 0.71 +0.4
267,002 + GFF2584 0.71 -0.6
267,111 + GFF2584 0.81 +0.4
267,111 + GFF2584 0.81 -0.1
267,112 - GFF2584 0.81 -1.2
267,112 - GFF2584 0.81 +0.7
267,112 - GFF2584 0.81 -2.3
267,112 - GFF2584 0.81 +1.3
267,112 - GFF2584 0.81 -0.5
267,114 + GFF2584 0.81 -0.9
267,115 - GFF2584 0.81 +1.3
267,135 + GFF2584 0.83 -0.9
267,135 + GFF2584 0.83 +0.7
267,136 - GFF2584 0.83 +0.2
267,179 - GFF2584 0.87 -0.2
267,179 - GFF2584 0.87 +0.9
267,193 - GFF2584 0.88 +0.4
267,308 + -0.5
267,308 + +1.3
267,308 + -0.0
267,308 + -1.6
267,308 + +0.6
267,309 - +0.3
267,309 - -0.4
267,309 - -0.7
267,480 + +0.3
267,480 + +0.5
267,480 + +0.9
267,480 + -0.6
267,481 - +0.1
267,481 - -0.8
267,481 - +0.6
267,481 - +0.6
267,808 - GFF2585 0.26 -0.0
268,044 + GFF2585 0.42 -1.0
268,090 + GFF2585 0.45 -0.5
268,090 + GFF2585 0.45 -0.6
268,135 + GFF2585 0.48 +0.7
268,136 - GFF2585 0.48 +0.3
268,164 - GFF2585 0.50 -0.4
268,200 - GFF2585 0.53 -0.3
268,200 - GFF2585 0.53 +0.1
268,262 + GFF2585 0.57 -0.3
268,290 + GFF2585 0.59 +1.2
268,291 - GFF2585 0.59 +0.2
268,291 - GFF2585 0.59 -0.3
268,291 - GFF2585 0.59 -0.3

Or see this region's nucleotide sequence