Strain Fitness in Xanthobacter sp. DMC5 around GFF2560

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2559 and GFF2560 are separated by 44 nucleotidesGFF2560 and GFF2561 overlap by 4 nucleotidesGFF2561 and GFF2562 are separated by 13 nucleotides GFF2559 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 232,445 to 233,725 GFF2559 GFF2560 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 233,770 to 234,609 GFF2560 GFF2561 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 234,606 to 235,367 GFF2561 GFF2562 - hypothetical protein, at 235,381 to 235,731 GFF2562 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1 2at 232.832 kb on + strand, within GFF2559at 232.832 kb on + strand, within GFF2559at 232.832 kb on + strand, within GFF2559at 232.844 kb on + strand, within GFF2559at 232.844 kb on + strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.845 kb on - strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.916 kb on + strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 232.917 kb on - strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.015 kb on + strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.016 kb on - strand, within GFF2559at 233.136 kb on + strand, within GFF2559at 233.136 kb on + strand, within GFF2559at 233.137 kb on - strand, within GFF2559at 233.137 kb on - strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.186 kb on + strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.187 kb on - strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.384 kb on + strand, within GFF2559at 233.401 kb on + strand, within GFF2559at 233.401 kb on + strand, within GFF2559at 233.402 kb on - strand, within GFF2559at 233.404 kb on - strand, within GFF2559at 233.536 kb on + strand, within GFF2559at 233.536 kb on + strand, within GFF2559at 233.537 kb on - strand, within GFF2559at 233.537 kb on - strand, within GFF2559at 233.537 kb on - strand, within GFF2559at 233.537 kb on - strand, within GFF2559at 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.681 kb on + strandat 233.682 kb on - strandat 233.682 kb on - strandat 233.682 kb on - strandat 233.682 kb on - strandat 233.682 kb on - strandat 233.682 kb on - strandat 233.724 kb on - strandat 233.724 kb on - strandat 233.845 kb on + strandat 233.845 kb on + strandat 233.845 kb on + strandat 233.846 kb on - strandat 233.846 kb on - strandat 233.846 kb on - strandat 233.846 kb on - strandat 233.890 kb on + strand, within GFF2560at 233.890 kb on + strand, within GFF2560at 233.891 kb on - strand, within GFF2560at 233.891 kb on - strand, within GFF2560at 233.891 kb on - strand, within GFF2560at 234.085 kb on + strand, within GFF2560at 234.085 kb on + strand, within GFF2560at 234.085 kb on + strand, within GFF2560at 234.085 kb on + strand, within GFF2560at 234.085 kb on + strand, within GFF2560at 234.086 kb on - strand, within GFF2560at 234.086 kb on - strand, within GFF2560at 234.086 kb on - strand, within GFF2560at 234.086 kb on - strand, within GFF2560at 234.151 kb on + strand, within GFF2560at 234.152 kb on - strand, within GFF2560at 234.152 kb on - strand, within GFF2560at 234.256 kb on - strand, within GFF2560at 234.262 kb on + strand, within GFF2560at 234.262 kb on + strand, within GFF2560at 234.262 kb on + strand, within GFF2560at 234.262 kb on + strand, within GFF2560at 234.263 kb on - strand, within GFF2560at 234.263 kb on - strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.385 kb on + strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.386 kb on - strand, within GFF2560at 234.391 kb on + strand, within GFF2560at 234.529 kb on + strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.530 kb on - strandat 234.561 kb on + strandat 234.562 kb on - strandat 234.562 kb on - strandat 234.562 kb on - strandat 234.570 kb on + strandat 234.570 kb on + strandat 234.571 kb on - strandat 234.571 kb on - strandat 234.571 kb on - strandat 234.957 kb on - strand, within GFF2561at 235.077 kb on + strand, within GFF2561at 235.078 kb on - strand, within GFF2561at 235.078 kb on - strand, within GFF2561at 235.173 kb on + strand, within GFF2561at 235.174 kb on - strand, within GFF2561at 235.174 kb on - strand, within GFF2561at 235.317 kb on + strandat 235.318 kb on - strandat 235.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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232,832 + GFF2559 0.30 -0.7
232,832 + GFF2559 0.30 -0.3
232,832 + GFF2559 0.30 -0.7
232,844 + GFF2559 0.31 +0.5
232,844 + GFF2559 0.31 -0.5
232,845 - GFF2559 0.31 +0.4
232,845 - GFF2559 0.31 +0.6
232,845 - GFF2559 0.31 -1.2
232,845 - GFF2559 0.31 +0.5
232,845 - GFF2559 0.31 -0.3
232,845 - GFF2559 0.31 +0.1
232,916 + GFF2559 0.37 +0.6
232,916 + GFF2559 0.37 +0.4
232,916 + GFF2559 0.37 -0.1
232,916 + GFF2559 0.37 -0.0
232,916 + GFF2559 0.37 -0.0
232,916 + GFF2559 0.37 -0.4
232,916 + GFF2559 0.37 -0.4
232,916 + GFF2559 0.37 -0.0
232,916 + GFF2559 0.37 -1.4
232,917 - GFF2559 0.37 -0.6
232,917 - GFF2559 0.37 +0.1
232,917 - GFF2559 0.37 +0.4
232,917 - GFF2559 0.37 -0.2
232,917 - GFF2559 0.37 -0.2
233,015 + GFF2559 0.44 +1.1
233,015 + GFF2559 0.44 +0.3
233,015 + GFF2559 0.44 -0.8
233,016 - GFF2559 0.45 +0.3
233,016 - GFF2559 0.45 +1.0
233,016 - GFF2559 0.45 -0.7
233,016 - GFF2559 0.45 +0.4
233,016 - GFF2559 0.45 -0.3
233,136 + GFF2559 0.54 -0.0
233,136 + GFF2559 0.54 -0.2
233,137 - GFF2559 0.54 -0.1
233,137 - GFF2559 0.54 -0.0
233,186 + GFF2559 0.58 -0.4
233,186 + GFF2559 0.58 +0.6
233,186 + GFF2559 0.58 -0.5
233,186 + GFF2559 0.58 +0.6
233,186 + GFF2559 0.58 +0.7
233,187 - GFF2559 0.58 -0.3
233,187 - GFF2559 0.58 -0.7
233,187 - GFF2559 0.58 +0.2
233,187 - GFF2559 0.58 +0.1
233,187 - GFF2559 0.58 -0.7
233,384 + GFF2559 0.73 +0.3
233,384 + GFF2559 0.73 +0.8
233,384 + GFF2559 0.73 +0.5
233,401 + GFF2559 0.75 +0.2
233,401 + GFF2559 0.75 +0.3
233,402 - GFF2559 0.75 -1.0
233,404 - GFF2559 0.75 +0.8
233,536 + GFF2559 0.85 +0.5
233,536 + GFF2559 0.85 +0.7
233,537 - GFF2559 0.85 +0.3
233,537 - GFF2559 0.85 +0.8
233,537 - GFF2559 0.85 -0.0
233,537 - GFF2559 0.85 -1.6
233,681 + -0.9
233,681 + +0.2
233,681 + +0.8
233,681 + +0.2
233,681 + -0.1
233,681 + +0.3
233,681 + +0.0
233,681 + +0.3
233,681 + +0.3
233,681 + +0.4
233,682 - -0.2
233,682 - +0.3
233,682 - -0.5
233,682 - -0.3
233,682 - +0.8
233,682 - +0.3
233,724 - -0.4
233,724 - +0.5
233,845 + -1.8
233,845 + +0.5
233,845 + -1.0
233,846 - -0.4
233,846 - +2.0
233,846 - +0.3
233,846 - -0.0
233,890 + GFF2560 0.14 -1.2
233,890 + GFF2560 0.14 +0.8
233,891 - GFF2560 0.14 +0.5
233,891 - GFF2560 0.14 -0.5
233,891 - GFF2560 0.14 +0.4
234,085 + GFF2560 0.38 -0.2
234,085 + GFF2560 0.38 +0.3
234,085 + GFF2560 0.38 +0.2
234,085 + GFF2560 0.38 -0.1
234,085 + GFF2560 0.38 -0.3
234,086 - GFF2560 0.38 +1.1
234,086 - GFF2560 0.38 -0.8
234,086 - GFF2560 0.38 +1.2
234,086 - GFF2560 0.38 -0.7
234,151 + GFF2560 0.45 -1.0
234,152 - GFF2560 0.45 -0.7
234,152 - GFF2560 0.45 -0.7
234,256 - GFF2560 0.58 +0.8
234,262 + GFF2560 0.59 -0.3
234,262 + GFF2560 0.59 +0.1
234,262 + GFF2560 0.59 +0.9
234,262 + GFF2560 0.59 -1.3
234,263 - GFF2560 0.59 +0.1
234,263 - GFF2560 0.59 -0.9
234,385 + GFF2560 0.73 -0.1
234,385 + GFF2560 0.73 +1.3
234,385 + GFF2560 0.73 +0.2
234,385 + GFF2560 0.73 -0.0
234,385 + GFF2560 0.73 -0.4
234,385 + GFF2560 0.73 +0.2
234,385 + GFF2560 0.73 -0.8
234,385 + GFF2560 0.73 +0.3
234,386 - GFF2560 0.73 -0.1
234,386 - GFF2560 0.73 -0.7
234,386 - GFF2560 0.73 +0.4
234,386 - GFF2560 0.73 -0.9
234,386 - GFF2560 0.73 -0.4
234,386 - GFF2560 0.73 +0.6
234,386 - GFF2560 0.73 +0.3
234,386 - GFF2560 0.73 -0.0
234,391 + GFF2560 0.74 +0.4
234,529 + +0.8
234,530 - -0.6
234,530 - +1.0
234,530 - -1.4
234,530 - -0.9
234,530 - +0.1
234,530 - +0.7
234,530 - +0.2
234,561 + -1.0
234,562 - -0.3
234,562 - -0.4
234,562 - +0.4
234,570 + -0.9
234,570 + -0.5
234,571 - +0.0
234,571 - -0.4
234,571 - +0.8
234,957 - GFF2561 0.46 -0.2
235,077 + GFF2561 0.62 +0.2
235,078 - GFF2561 0.62 +0.0
235,078 - GFF2561 0.62 +1.1
235,173 + GFF2561 0.74 +0.2
235,174 - GFF2561 0.75 -0.5
235,174 - GFF2561 0.75 +1.2
235,317 + +0.6
235,318 - -1.2
235,318 - -0.4

Or see this region's nucleotide sequence