Strain Fitness in Xanthobacter sp. DMC5 around GFF2554

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2553 and GFF2554 overlap by 4 nucleotidesGFF2554 and GFF2555 are separated by 5 nucleotidesGFF2555 and GFF2556 are separated by 129 nucleotides GFF2553 - Mannitol 2-dehydrogenase, at 225,370 to 226,848 GFF2553 GFF2554 - Uronate isomerase, at 226,845 to 228,257 GFF2554 GFF2555 - HTH-type transcriptional repressor RspR, at 228,263 to 229,033 GFF2555 GFF2556 - Galactarate dehydratase (L-threo-forming), at 229,163 to 230,695 GFF2556 Position (kb) 226 227 228 229Strain fitness (log2 ratio) -3 -2 -1 0 1at 225.923 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 226.015 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.448 kb on + strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.449 kb on - strand, within GFF2553at 226.604 kb on + strand, within GFF2553at 226.604 kb on + strand, within GFF2553at 226.605 kb on - strand, within GFF2553at 226.709 kb on + strandat 226.710 kb on - strandat 226.710 kb on - strandat 226.784 kb on + strandat 226.784 kb on + strandat 226.784 kb on + strandat 226.785 kb on - strandat 226.785 kb on - strandat 226.855 kb on + strandat 226.855 kb on + strandat 226.855 kb on + strandat 226.856 kb on - strandat 226.856 kb on - strandat 226.876 kb on + strandat 226.900 kb on - strandat 227.035 kb on + strand, within GFF2554at 227.132 kb on - strand, within GFF2554at 227.164 kb on + strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.165 kb on - strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.251 kb on + strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.252 kb on - strand, within GFF2554at 227.486 kb on - strand, within GFF2554at 227.542 kb on + strand, within GFF2554at 227.575 kb on + strand, within GFF2554at 227.678 kb on - strand, within GFF2554at 227.842 kb on + strand, within GFF2554at 227.842 kb on + strand, within GFF2554at 227.843 kb on - strand, within GFF2554at 227.843 kb on - strand, within GFF2554at 227.843 kb on - strand, within GFF2554at 227.947 kb on + strand, within GFF2554at 227.947 kb on + strand, within GFF2554at 227.947 kb on + strand, within GFF2554at 227.947 kb on + strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 227.948 kb on - strand, within GFF2554at 228.049 kb on + strand, within GFF2554at 228.050 kb on - strand, within GFF2554at 228.067 kb on + strand, within GFF2554at 228.067 kb on + strand, within GFF2554at 228.067 kb on + strand, within GFF2554at 228.068 kb on - strand, within GFF2554at 228.068 kb on - strand, within GFF2554at 228.068 kb on - strand, within GFF2554at 228.068 kb on - strand, within GFF2554at 228.124 kb on + strandat 228.185 kb on - strandat 228.310 kb on - strandat 228.761 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.789 kb on + strand, within GFF2555at 228.790 kb on - strand, within GFF2555at 228.790 kb on - strand, within GFF2555at 228.867 kb on + strand, within GFF2555at 228.867 kb on + strand, within GFF2555at 229.141 kb on + strandat 229.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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225,923 + GFF2553 0.37 -0.1
225,932 + GFF2553 0.38 +0.8
225,932 + GFF2553 0.38 -0.5
225,932 + GFF2553 0.38 +1.2
225,933 - GFF2553 0.38 +0.6
225,933 - GFF2553 0.38 +0.1
226,015 + GFF2553 0.44 -0.2
226,448 + GFF2553 0.73 -0.1
226,448 + GFF2553 0.73 +0.1
226,448 + GFF2553 0.73 +0.6
226,449 - GFF2553 0.73 -0.7
226,449 - GFF2553 0.73 +0.3
226,449 - GFF2553 0.73 +0.2
226,449 - GFF2553 0.73 -1.5
226,449 - GFF2553 0.73 -0.4
226,449 - GFF2553 0.73 -0.2
226,604 + GFF2553 0.83 -0.4
226,604 + GFF2553 0.83 +0.6
226,605 - GFF2553 0.84 -1.0
226,709 + +1.0
226,710 - +0.7
226,710 - +0.7
226,784 + +0.4
226,784 + -0.6
226,784 + -0.5
226,785 - -1.0
226,785 - +0.4
226,855 + -0.5
226,855 + -0.3
226,855 + +0.3
226,856 - -0.6
226,856 - +0.8
226,876 + -0.3
226,900 - +1.4
227,035 + GFF2554 0.13 +0.6
227,132 - GFF2554 0.20 -0.3
227,164 + GFF2554 0.23 -2.1
227,165 - GFF2554 0.23 -0.3
227,165 - GFF2554 0.23 -1.9
227,165 - GFF2554 0.23 +0.0
227,165 - GFF2554 0.23 -0.3
227,165 - GFF2554 0.23 +0.8
227,165 - GFF2554 0.23 +0.2
227,165 - GFF2554 0.23 -1.9
227,251 + GFF2554 0.29 -0.0
227,251 + GFF2554 0.29 -0.1
227,251 + GFF2554 0.29 -0.2
227,251 + GFF2554 0.29 -0.9
227,252 - GFF2554 0.29 -0.8
227,252 - GFF2554 0.29 -0.1
227,252 - GFF2554 0.29 -0.2
227,486 - GFF2554 0.45 +0.2
227,542 + GFF2554 0.49 -1.4
227,575 + GFF2554 0.52 +0.6
227,678 - GFF2554 0.59 +1.0
227,842 + GFF2554 0.71 +0.1
227,842 + GFF2554 0.71 +0.1
227,843 - GFF2554 0.71 -1.2
227,843 - GFF2554 0.71 -0.7
227,843 - GFF2554 0.71 -0.2
227,947 + GFF2554 0.78 -0.1
227,947 + GFF2554 0.78 +0.1
227,947 + GFF2554 0.78 -0.1
227,947 + GFF2554 0.78 -0.4
227,948 - GFF2554 0.78 +0.9
227,948 - GFF2554 0.78 -0.2
227,948 - GFF2554 0.78 +0.3
227,948 - GFF2554 0.78 -0.0
227,948 - GFF2554 0.78 -0.6
227,948 - GFF2554 0.78 -0.7
227,948 - GFF2554 0.78 -0.2
227,948 - GFF2554 0.78 -0.7
227,948 - GFF2554 0.78 +0.9
228,049 + GFF2554 0.85 +0.8
228,050 - GFF2554 0.85 -0.7
228,067 + GFF2554 0.86 +0.2
228,067 + GFF2554 0.86 -0.1
228,067 + GFF2554 0.86 +0.9
228,068 - GFF2554 0.87 -2.8
228,068 - GFF2554 0.87 -0.9
228,068 - GFF2554 0.87 -0.1
228,068 - GFF2554 0.87 +0.7
228,124 + -0.6
228,185 - -0.9
228,310 - -0.6
228,761 + GFF2555 0.65 -0.1
228,789 + GFF2555 0.68 +0.7
228,789 + GFF2555 0.68 +0.0
228,789 + GFF2555 0.68 -0.2
228,789 + GFF2555 0.68 +0.8
228,790 - GFF2555 0.68 +1.0
228,790 - GFF2555 0.68 -0.1
228,867 + GFF2555 0.78 +0.6
228,867 + GFF2555 0.78 -0.2
229,141 + -0.2
229,141 + +0.4

Or see this region's nucleotide sequence