Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2545 and GFF2546 are separated by 386 nucleotides GFF2546 and GFF2547 are separated by 137 nucleotides
GFF2545 - hypothetical protein, at 216,511 to 217,452
GFF2545
GFF2546 - hypothetical protein, at 217,839 to 218,636
GFF2546
GFF2547 - 2-ketogluconate reductase, at 218,774 to 219,730
GFF2547
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 216.875 kb on + strand, within GFF2545 at 216.875 kb on + strand, within GFF2545 at 216.902 kb on + strand, within GFF2545 at 216.903 kb on - strand, within GFF2545 at 216.914 kb on + strand, within GFF2545 at 216.914 kb on + strand, within GFF2545 at 216.915 kb on - strand, within GFF2545 at 216.915 kb on - strand, within GFF2545 at 216.917 kb on + strand, within GFF2545 at 216.956 kb on + strand, within GFF2545 at 216.956 kb on + strand, within GFF2545 at 216.983 kb on + strand, within GFF2545 at 217.044 kb on - strand, within GFF2545 at 217.047 kb on - strand, within GFF2545 at 217.047 kb on - strand, within GFF2545 at 217.049 kb on + strand, within GFF2545 at 217.049 kb on + strand, within GFF2545 at 217.053 kb on - strand, within GFF2545 at 217.106 kb on + strand, within GFF2545 at 217.145 kb on + strand, within GFF2545 at 217.202 kb on + strand, within GFF2545 at 217.203 kb on - strand, within GFF2545 at 217.232 kb on + strand, within GFF2545 at 217.232 kb on + strand, within GFF2545 at 217.232 kb on + strand, within GFF2545 at 217.233 kb on - strand, within GFF2545 at 217.233 kb on - strand, within GFF2545 at 217.283 kb on + strand, within GFF2545 at 217.284 kb on - strand, within GFF2545 at 217.284 kb on - strand, within GFF2545 at 217.452 kb on + strand at 217.484 kb on - strand at 217.764 kb on - strand at 218.173 kb on + strand, within GFF2546 at 218.204 kb on - strand, within GFF2546 at 218.695 kb on - strand at 218.695 kb on - strand at 218.695 kb on - strand at 219.180 kb on + strand, within GFF2547 at 219.189 kb on + strand, within GFF2547 at 219.190 kb on - strand, within GFF2547 at 219.222 kb on + strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.223 kb on - strand, within GFF2547 at 219.330 kb on + strand, within GFF2547 at 219.504 kb on + strand, within GFF2547 at 219.505 kb on - strand, within GFF2547
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 216,875 + GFF2545 0.39 -2.0 216,875 + GFF2545 0.39 -0.3 216,902 + GFF2545 0.42 -0.6 216,903 - GFF2545 0.42 -0.4 216,914 + GFF2545 0.43 -0.4 216,914 + GFF2545 0.43 -0.6 216,915 - GFF2545 0.43 -0.8 216,915 - GFF2545 0.43 +0.1 216,917 + GFF2545 0.43 +0.4 216,956 + GFF2545 0.47 +1.6 216,956 + GFF2545 0.47 +0.3 216,983 + GFF2545 0.50 -0.0 217,044 - GFF2545 0.57 -0.8 217,047 - GFF2545 0.57 +0.3 217,047 - GFF2545 0.57 +0.1 217,049 + GFF2545 0.57 +0.0 217,049 + GFF2545 0.57 -0.8 217,053 - GFF2545 0.58 +1.2 217,106 + GFF2545 0.63 -1.0 217,145 + GFF2545 0.67 -0.2 217,202 + GFF2545 0.73 -0.2 217,203 - GFF2545 0.73 -0.3 217,232 + GFF2545 0.77 -0.2 217,232 + GFF2545 0.77 -1.0 217,232 + GFF2545 0.77 -1.5 217,233 - GFF2545 0.77 -1.6 217,233 - GFF2545 0.77 +0.3 217,283 + GFF2545 0.82 -0.1 217,284 - GFF2545 0.82 -0.3 217,284 - GFF2545 0.82 -0.9 217,452 + -0.4 217,484 - -0.5 217,764 - -0.0 218,173 + GFF2546 0.42 -0.7 218,204 - GFF2546 0.46 -0.8 218,695 - -2.9 218,695 - -0.4 218,695 - -0.5 219,180 + GFF2547 0.42 -0.0 219,189 + GFF2547 0.43 +0.1 219,190 - GFF2547 0.43 +0.6 219,222 + GFF2547 0.47 +0.3 219,223 - GFF2547 0.47 +1.1 219,223 - GFF2547 0.47 -0.1 219,330 + GFF2547 0.58 -0.8 219,504 + GFF2547 0.76 +0.7 219,505 - GFF2547 0.76 -0.3
Or see this region's nucleotide sequence