Strain Fitness in Xanthobacter sp. DMC5 around GFF2538

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2537 and GFF2538 are separated by 469 nucleotidesGFF2538 and GFF2539 overlap by 1 nucleotides GFF2537 - Formyl-CoA:oxalate CoA-transferase, at 206,899 to 208,152 GFF2537 GFF2538 - Succinate--CoA ligase [ADP-forming] subunit beta, at 208,622 to 209,824 GFF2538 GFF2539 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 209,824 to 210,708 GFF2539 Position (kb) 208 209 210Strain fitness (log2 ratio) -1 0 1at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.701 kb on - strand, within GFF2537at 207.706 kb on + strand, within GFF2537at 207.707 kb on - strand, within GFF2537at 207.707 kb on - strand, within GFF2537at 207.707 kb on - strand, within GFF2537at 207.784 kb on + strand, within GFF2537at 207.785 kb on - strand, within GFF2537at 208.001 kb on - strand, within GFF2537at 208.105 kb on + strandat 208.106 kb on - strandat 208.420 kb on + strandat 208.421 kb on - strandat 208.421 kb on - strandat 208.637 kb on + strandat 208.637 kb on + strandat 208.638 kb on - strandat 208.840 kb on + strand, within GFF2538at 208.840 kb on + strand, within GFF2538at 208.841 kb on - strand, within GFF2538at 208.940 kb on + strand, within GFF2538at 208.940 kb on + strand, within GFF2538at 208.941 kb on - strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.204 kb on + strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.205 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.394 kb on - strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.405 kb on + strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.406 kb on - strand, within GFF2538at 209.408 kb on - strand, within GFF2538at 209.486 kb on + strand, within GFF2538at 209.709 kb on - strandat 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.914 kb on + strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 209.915 kb on - strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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207,701 - GFF2537 0.64 -0.1
207,701 - GFF2537 0.64 +0.7
207,701 - GFF2537 0.64 -0.2
207,701 - GFF2537 0.64 -0.2
207,701 - GFF2537 0.64 +0.6
207,701 - GFF2537 0.64 -0.0
207,701 - GFF2537 0.64 +1.6
207,701 - GFF2537 0.64 +0.6
207,701 - GFF2537 0.64 -0.0
207,706 + GFF2537 0.64 -0.4
207,707 - GFF2537 0.64 -0.4
207,707 - GFF2537 0.64 +1.3
207,707 - GFF2537 0.64 +0.5
207,784 + GFF2537 0.71 -0.4
207,785 - GFF2537 0.71 -1.3
208,001 - GFF2537 0.88 +0.2
208,105 + -0.0
208,106 - -0.0
208,420 + +0.8
208,421 - -0.4
208,421 - +0.7
208,637 + +0.0
208,637 + -1.7
208,638 - +0.7
208,840 + GFF2538 0.18 +0.8
208,840 + GFF2538 0.18 +0.9
208,841 - GFF2538 0.18 -0.4
208,940 + GFF2538 0.26 +0.4
208,940 + GFF2538 0.26 -0.3
208,941 - GFF2538 0.27 -0.1
209,204 + GFF2538 0.48 -0.2
209,204 + GFF2538 0.48 +0.5
209,204 + GFF2538 0.48 -1.0
209,205 - GFF2538 0.48 -1.1
209,205 - GFF2538 0.48 +0.7
209,205 - GFF2538 0.48 -0.2
209,205 - GFF2538 0.48 -0.9
209,205 - GFF2538 0.48 -0.2
209,205 - GFF2538 0.48 -0.5
209,394 - GFF2538 0.64 -0.2
209,394 - GFF2538 0.64 -1.2
209,394 - GFF2538 0.64 +0.1
209,405 + GFF2538 0.65 -0.6
209,405 + GFF2538 0.65 -0.1
209,405 + GFF2538 0.65 -0.2
209,405 + GFF2538 0.65 +0.5
209,406 - GFF2538 0.65 +0.7
209,406 - GFF2538 0.65 +0.4
209,406 - GFF2538 0.65 -0.3
209,406 - GFF2538 0.65 -0.4
209,406 - GFF2538 0.65 -0.4
209,406 - GFF2538 0.65 +0.1
209,406 - GFF2538 0.65 +0.1
209,406 - GFF2538 0.65 +0.4
209,408 - GFF2538 0.65 +0.3
209,486 + GFF2538 0.72 +0.4
209,709 - -0.8
209,914 + GFF2539 0.10 +0.6
209,914 + GFF2539 0.10 -0.1
209,914 + GFF2539 0.10 -0.2
209,914 + GFF2539 0.10 +0.4
209,914 + GFF2539 0.10 +0.5
209,914 + GFF2539 0.10 -0.6
209,914 + GFF2539 0.10 -0.8
209,914 + GFF2539 0.10 -0.0
209,915 - GFF2539 0.10 +0.2
209,915 - GFF2539 0.10 -0.8
209,915 - GFF2539 0.10 +0.3
210,037 + GFF2539 0.24 +0.2
210,037 + GFF2539 0.24 +1.4
210,037 + GFF2539 0.24 -0.6
210,037 + GFF2539 0.24 +0.1
210,037 + GFF2539 0.24 -0.0
210,038 - GFF2539 0.24 -0.3
210,038 - GFF2539 0.24 -0.6
210,038 - GFF2539 0.24 +0.8
210,298 + GFF2539 0.54 -0.4
210,298 + GFF2539 0.54 -0.0
210,298 + GFF2539 0.54 +0.6
210,298 + GFF2539 0.54 -0.2
210,298 + GFF2539 0.54 +0.3
210,298 + GFF2539 0.54 +0.1

Or see this region's nucleotide sequence