Strain Fitness in Xanthobacter sp. DMC5 around GFF2532

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2531 and GFF2532 are separated by 210 nucleotidesGFF2532 and GFF2533 are separated by 198 nucleotidesGFF2533 and GFF2534 are separated by 40 nucleotides GFF2531 - hypothetical protein, at 199,841 to 200,365 GFF2531 GFF2532 - hypothetical protein, at 200,576 to 202,090 GFF2532 GFF2533 - HTH-type transcriptional repressor RspR, at 202,289 to 203,017 GFF2533 GFF2534 - Oxalyl-CoA decarboxylase, at 203,058 to 204,818 GFF2534 Position (kb) 200 201 202 203Strain fitness (log2 ratio) -1 0 1 2at 199.578 kb on + strandat 199.578 kb on + strandat 199.579 kb on - strandat 199.579 kb on - strandat 199.774 kb on + strandat 199.774 kb on + strandat 199.800 kb on + strandat 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.024 kb on + strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.025 kb on - strand, within GFF2531at 200.162 kb on + strand, within GFF2531at 200.163 kb on - strand, within GFF2531at 200.163 kb on - strand, within GFF2531at 200.193 kb on - strand, within GFF2531at 200.193 kb on - strand, within GFF2531at 200.305 kb on - strand, within GFF2531at 200.361 kb on - strandat 200.487 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.639 kb on + strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.640 kb on - strandat 200.777 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.026 kb on + strand, within GFF2532at 201.027 kb on - strand, within GFF2532at 201.315 kb on - strand, within GFF2532at 201.327 kb on - strand, within GFF2532at 201.413 kb on + strand, within GFF2532at 201.413 kb on + strand, within GFF2532at 201.413 kb on + strand, within GFF2532at 201.413 kb on + strand, within GFF2532at 201.414 kb on - strand, within GFF2532at 201.414 kb on - strand, within GFF2532at 201.414 kb on - strand, within GFF2532at 201.665 kb on + strand, within GFF2532at 201.665 kb on + strand, within GFF2532at 201.666 kb on - strand, within GFF2532at 201.666 kb on - strand, within GFF2532at 201.666 kb on - strand, within GFF2532at 201.666 kb on - strand, within GFF2532at 201.789 kb on - strand, within GFF2532at 201.856 kb on + strand, within GFF2532at 201.856 kb on + strand, within GFF2532at 201.857 kb on - strand, within GFF2532at 201.857 kb on - strand, within GFF2532at 201.857 kb on - strand, within GFF2532at 202.089 kb on - strandat 202.129 kb on + strandat 202.351 kb on - strandat 202.351 kb on - strandat 202.351 kb on - strandat 202.391 kb on + strand, within GFF2533at 202.391 kb on + strand, within GFF2533at 202.392 kb on - strand, within GFF2533at 202.431 kb on - strand, within GFF2533at 202.431 kb on - strand, within GFF2533at 202.450 kb on - strand, within GFF2533at 202.743 kb on - strand, within GFF2533at 202.743 kb on - strand, within GFF2533at 203.015 kb on + strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.016 kb on - strandat 203.046 kb on + strandat 203.047 kb on + strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.047 kb on - strandat 203.063 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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199,578 + +0.2
199,578 + -0.4
199,579 - +0.1
199,579 - -0.6
199,774 + -0.3
199,774 + -0.4
199,800 + -0.1
200,024 + GFF2531 0.35 +0.3
200,024 + GFF2531 0.35 -0.0
200,024 + GFF2531 0.35 -0.6
200,024 + GFF2531 0.35 -0.7
200,024 + GFF2531 0.35 +0.8
200,024 + GFF2531 0.35 -0.8
200,024 + GFF2531 0.35 +0.3
200,025 - GFF2531 0.35 +0.5
200,025 - GFF2531 0.35 +0.0
200,025 - GFF2531 0.35 -0.4
200,025 - GFF2531 0.35 -1.3
200,025 - GFF2531 0.35 -0.3
200,025 - GFF2531 0.35 -0.4
200,025 - GFF2531 0.35 -0.3
200,025 - GFF2531 0.35 -0.8
200,162 + GFF2531 0.61 -0.5
200,163 - GFF2531 0.61 +0.1
200,163 - GFF2531 0.61 -0.8
200,193 - GFF2531 0.67 -0.4
200,193 - GFF2531 0.67 -0.1
200,305 - GFF2531 0.88 -0.5
200,361 - +1.0
200,487 + +1.0
200,639 + +0.7
200,639 + -0.5
200,639 + +0.2
200,639 + +1.0
200,639 + -0.4
200,639 + -0.1
200,639 + -0.1
200,639 + -0.2
200,640 - +0.8
200,640 - -0.0
200,640 - +0.8
200,640 - -0.2
200,640 - -0.5
200,640 - -0.3
200,640 - +0.7
200,640 - -0.1
200,640 - -0.4
200,777 + GFF2532 0.13 -0.0
201,026 + GFF2532 0.30 +1.6
201,026 + GFF2532 0.30 -1.1
201,026 + GFF2532 0.30 -0.3
201,027 - GFF2532 0.30 -0.8
201,315 - GFF2532 0.49 +0.8
201,327 - GFF2532 0.50 -1.6
201,413 + GFF2532 0.55 -0.0
201,413 + GFF2532 0.55 +1.4
201,413 + GFF2532 0.55 -0.2
201,413 + GFF2532 0.55 +0.6
201,414 - GFF2532 0.55 +0.2
201,414 - GFF2532 0.55 +0.4
201,414 - GFF2532 0.55 -0.1
201,665 + GFF2532 0.72 +0.7
201,665 + GFF2532 0.72 -0.0
201,666 - GFF2532 0.72 +0.1
201,666 - GFF2532 0.72 -0.2
201,666 - GFF2532 0.72 +0.4
201,666 - GFF2532 0.72 +0.6
201,789 - GFF2532 0.80 -0.1
201,856 + GFF2532 0.84 -0.7
201,856 + GFF2532 0.84 -0.6
201,857 - GFF2532 0.85 -0.2
201,857 - GFF2532 0.85 -0.8
201,857 - GFF2532 0.85 -0.5
202,089 - +0.0
202,129 + +0.5
202,351 - -0.0
202,351 - -0.4
202,351 - +0.3
202,391 + GFF2533 0.14 -1.2
202,391 + GFF2533 0.14 +1.8
202,392 - GFF2533 0.14 -0.6
202,431 - GFF2533 0.19 -0.3
202,431 - GFF2533 0.19 +0.2
202,450 - GFF2533 0.22 -0.4
202,743 - GFF2533 0.62 -0.2
202,743 - GFF2533 0.62 -0.8
203,015 + +0.2
203,016 - -0.3
203,016 - -0.2
203,016 - -0.6
203,016 - -0.4
203,046 + +0.6
203,047 + +0.4
203,047 - -0.1
203,047 - +0.2
203,047 - +0.3
203,047 - +0.3
203,063 + -0.2

Or see this region's nucleotide sequence