Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2529 and GFF2530 are separated by 357 nucleotides GFF2530 and GFF2531 are separated by 273 nucleotides
GFF2529 - Transcriptional repressor IclR, at 197,339 to 198,193
GFF2529
GFF2530 - hypothetical protein, at 198,551 to 199,567
GFF2530
GFF2531 - hypothetical protein, at 199,841 to 200,365
GFF2531
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 197.584 kb on - strand, within GFF2529 at 197.624 kb on + strand, within GFF2529 at 197.625 kb on - strand, within GFF2529 at 197.882 kb on + strand, within GFF2529 at 198.176 kb on + strand at 198.176 kb on + strand at 198.246 kb on - strand at 198.294 kb on + strand at 198.295 kb on - strand at 198.313 kb on + strand at 198.338 kb on + strand at 198.373 kb on - strand at 198.417 kb on + strand at 198.424 kb on + strand at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.889 kb on - strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.971 kb on + strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 198.972 kb on - strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.112 kb on + strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.113 kb on - strand, within GFF2530 at 199.247 kb on + strand, within GFF2530 at 199.248 kb on - strand, within GFF2530 at 199.248 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.263 kb on - strand, within GFF2530 at 199.337 kb on + strand, within GFF2530 at 199.337 kb on + strand, within GFF2530 at 199.338 kb on - strand, within GFF2530 at 199.493 kb on + strand at 199.566 kb on - strand at 199.566 kb on - strand at 199.578 kb on + strand at 199.578 kb on + strand at 199.579 kb on - strand at 199.579 kb on - strand at 199.774 kb on + strand at 199.774 kb on + strand at 199.800 kb on + strand at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.024 kb on + strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.025 kb on - strand, within GFF2531 at 200.162 kb on + strand, within GFF2531 at 200.163 kb on - strand, within GFF2531 at 200.163 kb on - strand, within GFF2531 at 200.193 kb on - strand, within GFF2531 at 200.193 kb on - strand, within GFF2531 at 200.305 kb on - strand, within GFF2531 at 200.361 kb on - strand at 200.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 197,584 - GFF2529 0.29 +0.2 197,624 + GFF2529 0.33 -0.2 197,625 - GFF2529 0.33 -0.3 197,882 + GFF2529 0.64 +0.2 198,176 + -0.8 198,176 + -0.5 198,246 - +0.2 198,294 + -1.8 198,295 - -0.9 198,313 + +0.1 198,338 + +1.0 198,373 - -0.6 198,417 + -0.6 198,424 + +0.9 198,889 - GFF2530 0.33 +0.5 198,889 - GFF2530 0.33 -0.1 198,889 - GFF2530 0.33 -0.5 198,889 - GFF2530 0.33 -0.2 198,889 - GFF2530 0.33 +0.1 198,971 + GFF2530 0.41 +0.6 198,971 + GFF2530 0.41 +0.3 198,971 + GFF2530 0.41 -0.5 198,972 - GFF2530 0.41 -1.2 198,972 - GFF2530 0.41 +0.1 198,972 - GFF2530 0.41 +1.4 198,972 - GFF2530 0.41 +0.7 199,112 + GFF2530 0.55 -0.4 199,112 + GFF2530 0.55 -0.4 199,112 + GFF2530 0.55 +0.4 199,112 + GFF2530 0.55 -0.9 199,112 + GFF2530 0.55 +1.0 199,113 - GFF2530 0.55 -0.5 199,113 - GFF2530 0.55 -0.0 199,113 - GFF2530 0.55 +0.8 199,113 - GFF2530 0.55 -0.4 199,113 - GFF2530 0.55 +0.2 199,113 - GFF2530 0.55 +0.6 199,247 + GFF2530 0.68 +0.3 199,248 - GFF2530 0.69 -1.4 199,248 - GFF2530 0.69 +0.3 199,263 - GFF2530 0.70 +0.4 199,263 - GFF2530 0.70 -0.7 199,263 - GFF2530 0.70 +0.1 199,263 - GFF2530 0.70 +1.1 199,263 - GFF2530 0.70 +0.1 199,263 - GFF2530 0.70 -0.2 199,337 + GFF2530 0.77 +0.6 199,337 + GFF2530 0.77 -0.4 199,338 - GFF2530 0.77 -1.4 199,493 + -0.4 199,566 - +0.2 199,566 - -0.1 199,578 + +0.2 199,578 + -0.4 199,579 - +0.1 199,579 - -0.6 199,774 + -0.3 199,774 + -0.4 199,800 + -0.1 200,024 + GFF2531 0.35 +0.3 200,024 + GFF2531 0.35 -0.0 200,024 + GFF2531 0.35 -0.6 200,024 + GFF2531 0.35 -0.7 200,024 + GFF2531 0.35 +0.8 200,024 + GFF2531 0.35 -0.8 200,024 + GFF2531 0.35 +0.3 200,025 - GFF2531 0.35 +0.5 200,025 - GFF2531 0.35 +0.0 200,025 - GFF2531 0.35 -0.4 200,025 - GFF2531 0.35 -1.3 200,025 - GFF2531 0.35 -0.3 200,025 - GFF2531 0.35 -0.4 200,025 - GFF2531 0.35 -0.3 200,025 - GFF2531 0.35 -0.8 200,162 + GFF2531 0.61 -0.5 200,163 - GFF2531 0.61 +0.1 200,163 - GFF2531 0.61 -0.8 200,193 - GFF2531 0.67 -0.4 200,193 - GFF2531 0.67 -0.1 200,305 - GFF2531 0.88 -0.5 200,361 - +1.0 200,487 + +1.0
Or see this region's nucleotide sequence