Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF242 and GFF243 are separated by 3 nucleotides GFF243 and GFF244 are separated by 213 nucleotides GFF244 and GFF245 are separated by 108 nucleotides
GFF242 - Multifunctional non-homologous end joining protein LigD, at 251,498 to 254,089
GFF242
GFF243 - Non-homologous end joining protein Ku, at 254,093 to 254,995
GFF243
GFF244 - hypothetical protein, at 255,209 to 255,493
GFF244
GFF245 - Delta(1)-pyrroline-2-carboxylate reductase, at 255,602 to 256,537
GFF245
Position (kb) 254
255 Strain fitness (log2 ratio) -2
-1
0
1 at 253.234 kb on - strand, within GFF242 at 253.310 kb on + strand, within GFF242 at 253.310 kb on + strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.311 kb on - strand, within GFF242 at 253.706 kb on - strand, within GFF242 at 253.719 kb on + strand, within GFF242 at 253.720 kb on - strand, within GFF242 at 253.824 kb on + strand, within GFF242 at 253.941 kb on + strand at 253.942 kb on - strand at 254.070 kb on + strand at 254.344 kb on - strand, within GFF243 at 254.355 kb on + strand, within GFF243 at 254.478 kb on + strand, within GFF243 at 254.478 kb on + strand, within GFF243 at 254.673 kb on + strand, within GFF243 at 254.673 kb on + strand, within GFF243 at 254.716 kb on - strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.797 kb on - strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 255.019 kb on + strand at 255.019 kb on + strand at 255.020 kb on - strand at 255.231 kb on + strand at 255.231 kb on + strand at 255.231 kb on + strand at 255.232 kb on - strand at 255.232 kb on - strand at 255.232 kb on - strand at 255.573 kb on + strand at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.858 kb on - strand, within GFF245
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 253,234 - GFF242 0.67 +0.8 253,310 + GFF242 0.70 -0.6 253,310 + GFF242 0.70 +0.1 253,311 - GFF242 0.70 +1.1 253,311 - GFF242 0.70 +0.4 253,311 - GFF242 0.70 -0.0 253,706 - GFF242 0.85 -0.2 253,719 + GFF242 0.86 +0.4 253,720 - GFF242 0.86 +0.6 253,824 + GFF242 0.90 +0.9 253,941 + +0.7 253,942 - -0.3 254,070 + -0.1 254,344 - GFF243 0.28 +0.3 254,355 + GFF243 0.29 -0.1 254,478 + GFF243 0.43 -0.1 254,478 + GFF243 0.43 -1.2 254,673 + GFF243 0.64 -2.1 254,673 + GFF243 0.64 -0.2 254,716 - GFF243 0.69 -0.1 254,775 + GFF243 0.76 +0.5 254,775 + GFF243 0.76 -0.1 254,775 + GFF243 0.76 +0.1 254,775 + GFF243 0.76 +0.5 254,797 - GFF243 0.78 -0.0 254,850 + GFF243 0.84 -1.2 254,850 + GFF243 0.84 +0.6 254,850 + GFF243 0.84 -0.8 254,850 + GFF243 0.84 -0.2 254,851 - GFF243 0.84 +0.8 254,851 - GFF243 0.84 -0.5 255,019 + -0.6 255,019 + +0.2 255,020 - +0.3 255,231 + +0.7 255,231 + -0.5 255,231 + -0.7 255,232 - -0.8 255,232 - +0.4 255,232 - +0.0 255,573 + -0.2 255,857 + GFF245 0.27 -1.3 255,857 + GFF245 0.27 +0.1 255,857 + GFF245 0.27 -0.3 255,857 + GFF245 0.27 +0.3 255,858 - GFF245 0.27 -0.5
Or see this region's nucleotide sequence