Strain Fitness in Xanthobacter sp. DMC5 around GFF2310

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2309 and GFF2310 are separated by 134 nucleotidesGFF2310 and GFF2311 are separated by 88 nucleotides GFF2309 - P-loop guanosine triphosphatase YjiA, at 1,020,568 to 1,021,746 GFF2309 GFF2310 - hypothetical protein, at 1,021,881 to 1,023,383 GFF2310 GFF2311 - Beta-(1-->2)glucan export ATP-binding/permease protein NdvA, at 1,023,472 to 1,025,268 GFF2311 Position (kb) 1021 1022 1023 1024Strain fitness (log2 ratio) -1 0 1 2at 1021.294 kb on - strand, within GFF2309at 1021.789 kb on + strandat 1021.789 kb on + strandat 1021.847 kb on + strandat 1021.848 kb on - strandat 1021.848 kb on - strandat 1021.848 kb on - strandat 1021.883 kb on - strandat 1022.164 kb on + strand, within GFF2310at 1022.165 kb on - strand, within GFF2310at 1023.416 kb on + strandat 1024.211 kb on + strand, within GFF2311at 1024.212 kb on - strand, within GFF2311

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,021,294 - GFF2309 0.62 -0.1
1,021,789 + -0.1
1,021,789 + +0.2
1,021,847 + +2.2
1,021,848 - +0.4
1,021,848 - +0.5
1,021,848 - +0.2
1,021,883 - -0.0
1,022,164 + GFF2310 0.19 -0.5
1,022,165 - GFF2310 0.19 -1.0
1,023,416 + +0.0
1,024,211 + GFF2311 0.41 -0.5
1,024,212 - GFF2311 0.41 +0.6

Or see this region's nucleotide sequence