Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2287 and GFF2288 are separated by 14 nucleotides GFF2288 and GFF2289 are separated by 96 nucleotides GFF2289 and GFF2290 are separated by 17 nucleotides
GFF2287 - hypothetical protein, at 995,522 to 996,292
GFF2287
GFF2288 - Inner membrane protein YqjF, at 996,307 to 996,714
GFF2288
GFF2289 - hypothetical protein, at 996,811 to 997,863
GFF2289
GFF2290 - Aspartate aminotransferase, at 997,881 to 999,116
GFF2290
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1 at 995.933 kb on + strand, within GFF2287 at 995.933 kb on + strand, within GFF2287 at 995.934 kb on - strand, within GFF2287 at 995.934 kb on - strand, within GFF2287 at 995.934 kb on - strand, within GFF2287 at 995.934 kb on - strand, within GFF2287 at 995.935 kb on + strand, within GFF2287 at 995.935 kb on + strand, within GFF2287 at 995.936 kb on - strand, within GFF2287 at 996.006 kb on - strand, within GFF2287 at 996.006 kb on - strand, within GFF2287 at 996.006 kb on - strand, within GFF2287 at 996.359 kb on + strand, within GFF2288 at 996.360 kb on - strand, within GFF2288 at 996.708 kb on + strand at 996.793 kb on + strand at 996.812 kb on + strand at 996.812 kb on + strand at 996.813 kb on - strand at 996.813 kb on - strand at 996.936 kb on - strand, within GFF2289 at 997.097 kb on + strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.098 kb on - strand, within GFF2289 at 997.681 kb on + strand, within GFF2289 at 998.054 kb on + strand, within GFF2290 at 998.055 kb on - strand, within GFF2290 at 998.055 kb on - strand, within GFF2290 at 998.104 kb on + strand, within GFF2290 at 998.105 kb on - strand, within GFF2290 at 998.105 kb on - strand, within GFF2290 at 998.279 kb on - strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.458 kb on + strand, within GFF2290 at 998.656 kb on + strand, within GFF2290 at 998.656 kb on + strand, within GFF2290 at 998.824 kb on + strand, within GFF2290
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 995,933 + GFF2287 0.53 +1.2 995,933 + GFF2287 0.53 +0.1 995,934 - GFF2287 0.53 -0.1 995,934 - GFF2287 0.53 +0.0 995,934 - GFF2287 0.53 +0.8 995,934 - GFF2287 0.53 -0.0 995,935 + GFF2287 0.54 +0.9 995,935 + GFF2287 0.54 +0.6 995,936 - GFF2287 0.54 -0.0 996,006 - GFF2287 0.63 -0.1 996,006 - GFF2287 0.63 +1.0 996,006 - GFF2287 0.63 -0.1 996,359 + GFF2288 0.13 +1.2 996,360 - GFF2288 0.13 -0.0 996,708 + -0.2 996,793 + -0.4 996,812 + -0.6 996,812 + -0.4 996,813 - +0.9 996,813 - -0.4 996,936 - GFF2289 0.12 -0.6 997,097 + GFF2289 0.27 -0.6 997,098 - GFF2289 0.27 +1.2 997,098 - GFF2289 0.27 -0.1 997,098 - GFF2289 0.27 +0.5 997,681 + GFF2289 0.83 +1.0 998,054 + GFF2290 0.14 -2.1 998,055 - GFF2290 0.14 -0.7 998,055 - GFF2290 0.14 -0.0 998,104 + GFF2290 0.18 -2.3 998,105 - GFF2290 0.18 +0.2 998,105 - GFF2290 0.18 -0.4 998,279 - GFF2290 0.32 +0.1 998,458 + GFF2290 0.47 -0.0 998,458 + GFF2290 0.47 +1.0 998,458 + GFF2290 0.47 -0.0 998,656 + GFF2290 0.63 +0.6 998,656 + GFF2290 0.63 +0.1 998,824 + GFF2290 0.76 +0.6
Or see this region's nucleotide sequence