Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF226 and GFF227 are separated by 101 nucleotides GFF227 and GFF228 are separated by 82 nucleotides GFF228 and GFF229 are separated by 166 nucleotides
GFF226 - Agmatinase, at 237,332 to 238,312
GFF226
GFF227 - Sodium-potassium/proton antiporter ChaA, at 238,414 to 239,511
GFF227
GFF228 - hypothetical protein, at 239,594 to 240,004
GFF228
GFF229 - hypothetical protein, at 240,171 to 240,842
GFF229
Position (kb) 238
239
240 Strain fitness (log2 ratio) -1
0
1 at 237.584 kb on + strand, within GFF226 at 237.585 kb on - strand, within GFF226 at 237.585 kb on - strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.704 kb on + strand, within GFF226 at 237.755 kb on + strand, within GFF226 at 237.755 kb on + strand, within GFF226 at 237.756 kb on - strand, within GFF226 at 237.953 kb on + strand, within GFF226 at 237.953 kb on + strand, within GFF226 at 237.954 kb on - strand, within GFF226 at 238.049 kb on + strand, within GFF226 at 238.209 kb on - strand, within GFF226 at 238.259 kb on + strand at 238.260 kb on - strand at 238.260 kb on - strand at 238.310 kb on + strand at 238.338 kb on - strand at 238.339 kb on + strand at 238.340 kb on - strand at 238.378 kb on + strand at 238.378 kb on + strand at 238.441 kb on + strand at 238.442 kb on - strand at 238.442 kb on - strand at 238.837 kb on + strand, within GFF227 at 238.838 kb on - strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.936 kb on + strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.937 kb on - strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.938 kb on + strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.939 kb on - strand, within GFF227 at 238.963 kb on + strand, within GFF227 at 238.964 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 238.979 kb on - strand, within GFF227 at 239.979 kb on - strand at 240.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 237,584 + GFF226 0.26 -1.0 237,585 - GFF226 0.26 +0.2 237,585 - GFF226 0.26 +1.0 237,704 + GFF226 0.38 -0.1 237,704 + GFF226 0.38 +1.0 237,704 + GFF226 0.38 -0.1 237,755 + GFF226 0.43 +0.4 237,755 + GFF226 0.43 +1.3 237,756 - GFF226 0.43 -0.9 237,953 + GFF226 0.63 -0.0 237,953 + GFF226 0.63 +0.4 237,954 - GFF226 0.63 +0.3 238,049 + GFF226 0.73 -0.1 238,209 - GFF226 0.89 +0.0 238,259 + +0.6 238,260 - -0.0 238,260 - +0.5 238,310 + -0.2 238,338 - +0.4 238,339 + +1.4 238,340 - -0.5 238,378 + -0.4 238,378 + +0.3 238,441 + +1.4 238,442 - -0.7 238,442 - -0.5 238,837 + GFF227 0.39 +0.1 238,838 - GFF227 0.39 +0.1 238,936 + GFF227 0.48 -1.7 238,936 + GFF227 0.48 +0.1 238,936 + GFF227 0.48 -0.4 238,936 + GFF227 0.48 -0.5 238,936 + GFF227 0.48 -1.6 238,937 - GFF227 0.48 -0.9 238,937 - GFF227 0.48 -0.1 238,937 - GFF227 0.48 -1.2 238,937 - GFF227 0.48 -0.9 238,937 - GFF227 0.48 +0.4 238,937 - GFF227 0.48 +0.2 238,938 + GFF227 0.48 +0.1 238,938 + GFF227 0.48 -0.1 238,939 - GFF227 0.48 +1.5 238,939 - GFF227 0.48 -0.5 238,963 + GFF227 0.50 +0.1 238,964 - GFF227 0.50 +1.2 238,979 - GFF227 0.51 -0.7 238,979 - GFF227 0.51 +0.6 238,979 - GFF227 0.51 +0.6 238,979 - GFF227 0.51 +0.2 239,979 - +0.8 240,037 - +0.2
Or see this region's nucleotide sequence