Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2248 and GFF2249 are separated by 24 nucleotides GFF2249 and GFF2250 are separated by 322 nucleotides GFF2250 and GFF2251 are separated by 55 nucleotides GFF2251 and GFF2252 are separated by 18 nucleotides
GFF2248 - Competence protein ComM, at 952,131 to 953,663
GFF2248
GFF2249 - hypothetical protein, at 953,688 to 954,296
GFF2249
GFF2250 - hypothetical protein, at 954,619 to 955,737
GFF2250
GFF2251 - Peptidyl-tRNA hydrolase ArfB, at 955,793 to 956,215
GFF2251
GFF2252 - DNA repair protein RecN, at 956,234 to 957,916
GFF2252
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1 at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 954.031 kb on + strand, within GFF2249 at 954.031 kb on + strand, within GFF2249 at 954.031 kb on + strand, within GFF2249 at 954.146 kb on - strand, within GFF2249 at 954.345 kb on + strand at 954.346 kb on - strand at 954.432 kb on + strand at 955.010 kb on - strand, within GFF2250 at 955.021 kb on + strand, within GFF2250 at 955.220 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.361 kb on - strand, within GFF2250 at 955.693 kb on + strand at 955.694 kb on - strand at 955.766 kb on + strand at 955.766 kb on + strand at 955.766 kb on + strand at 955.767 kb on - strand at 955.767 kb on - strand at 955.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 953,722 + -1.5 953,722 + -0.1 953,722 + -0.6 953,722 + -0.1 953,722 + -0.4 953,722 + +0.3 953,722 + +0.4 953,723 - +0.8 953,723 - -0.1 953,723 - +1.2 953,723 - -0.7 953,723 - -2.2 954,031 + GFF2249 0.56 +0.5 954,031 + GFF2249 0.56 -0.3 954,031 + GFF2249 0.56 -0.6 954,146 - GFF2249 0.75 -0.1 954,345 + -0.4 954,346 - +0.1 954,432 + +0.6 955,010 - GFF2250 0.35 -1.4 955,021 + GFF2250 0.36 +0.9 955,220 - GFF2250 0.54 +1.0 955,361 - GFF2250 0.66 +0.7 955,361 - GFF2250 0.66 -1.1 955,361 - GFF2250 0.66 -0.7 955,361 - GFF2250 0.66 -0.5 955,361 - GFF2250 0.66 +0.0 955,361 - GFF2250 0.66 +0.2 955,693 + +0.6 955,694 - -0.2 955,766 + -1.2 955,766 + -0.3 955,766 + -0.1 955,767 - +0.8 955,767 - +0.8 955,767 - -0.3
Or see this region's nucleotide sequence