Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2246 and GFF2247 are separated by 6 nucleotides GFF2247 and GFF2248 are separated by 144 nucleotides GFF2248 and GFF2249 are separated by 24 nucleotides GFF2249 and GFF2250 are separated by 322 nucleotides
GFF2246 - hypothetical protein, at 950,886 to 951,197
GFF2246
GFF2247 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 951,204 to 951,986
GFF2247
GFF2248 - Competence protein ComM, at 952,131 to 953,663
GFF2248
GFF2249 - hypothetical protein, at 953,688 to 954,296
GFF2249
GFF2250 - hypothetical protein, at 954,619 to 955,737
GFF2250
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1 at 951.195 kb on + strand at 951.448 kb on + strand, within GFF2247 at 951.449 kb on - strand, within GFF2247 at 951.449 kb on - strand, within GFF2247 at 951.757 kb on + strand, within GFF2247 at 951.910 kb on + strand at 951.910 kb on + strand at 951.911 kb on - strand at 951.911 kb on - strand at 952.011 kb on + strand at 952.011 kb on + strand at 952.011 kb on + strand at 952.012 kb on - strand at 952.369 kb on - strand, within GFF2248 at 953.060 kb on - strand, within GFF2248 at 953.285 kb on - strand, within GFF2248 at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.722 kb on + strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 953.723 kb on - strand at 954.031 kb on + strand, within GFF2249 at 954.031 kb on + strand, within GFF2249 at 954.031 kb on + strand, within GFF2249 at 954.146 kb on - strand, within GFF2249 at 954.345 kb on + strand at 954.346 kb on - strand at 954.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 951,195 + -0.2 951,448 + GFF2247 0.31 +0.8 951,449 - GFF2247 0.31 +1.1 951,449 - GFF2247 0.31 -1.4 951,757 + GFF2247 0.71 +0.0 951,910 + +0.5 951,910 + +0.9 951,911 - -0.0 951,911 - +0.9 952,011 + -0.0 952,011 + -0.4 952,011 + +1.0 952,012 - -0.5 952,369 - GFF2248 0.16 +0.6 953,060 - GFF2248 0.61 -0.7 953,285 - GFF2248 0.75 +0.5 953,722 + -1.5 953,722 + -0.1 953,722 + -0.6 953,722 + -0.1 953,722 + -0.4 953,722 + +0.3 953,722 + +0.4 953,723 - +0.8 953,723 - -0.1 953,723 - +1.2 953,723 - -0.7 953,723 - -2.2 954,031 + GFF2249 0.56 +0.5 954,031 + GFF2249 0.56 -0.3 954,031 + GFF2249 0.56 -0.6 954,146 - GFF2249 0.75 -0.1 954,345 + -0.4 954,346 - +0.1 954,432 + +0.6
Or see this region's nucleotide sequence