Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2218 and GFF2219 are separated by 220 nucleotides GFF2219 and GFF2220 are separated by 75 nucleotides GFF2220 and GFF2221 are separated by 110 nucleotides GFF2221 and GFF2222 are separated by 20 nucleotides
GFF2218 - Inner membrane transport permease YhhJ, at 924,427 to 925,593
GFF2218
GFF2219 - HTH-type transcriptional regulator CymR, at 925,814 to 926,260
GFF2219
GFF2220 - Intracellular septation protein, at 926,336 to 926,935
GFF2220
GFF2221 - Biosynthetic peptidoglycan transglycosylase, at 927,046 to 927,717
GFF2221
GFF2222 - Farnesyl diphosphate synthase, at 927,738 to 928,772
GFF2222
Position (kb) 926
927 Strain fitness (log2 ratio) -1
0
1 at 925.474 kb on + strand, within GFF2218 at 925.500 kb on - strand at 925.500 kb on - strand at 925.821 kb on + strand at 925.821 kb on + strand at 925.821 kb on + strand at 925.822 kb on - strand at 926.282 kb on - strand at 926.292 kb on - strand at 926.318 kb on - strand at 926.318 kb on - strand at 926.347 kb on + strand at 926.347 kb on + strand at 926.348 kb on - strand at 926.348 kb on - strand at 926.555 kb on + strand, within GFF2220 at 926.556 kb on - strand, within GFF2220 at 926.556 kb on - strand, within GFF2220 at 926.812 kb on - strand, within GFF2220 at 926.812 kb on - strand, within GFF2220 at 927.296 kb on + strand, within GFF2221 at 927.297 kb on - strand, within GFF2221 at 927.374 kb on + strand, within GFF2221 at 927.374 kb on + strand, within GFF2221 at 927.375 kb on - strand, within GFF2221 at 927.650 kb on + strand at 927.651 kb on - strand at 927.685 kb on + strand at 927.685 kb on + strand at 927.685 kb on + strand at 927.686 kb on - strand at 927.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 925,474 + GFF2218 0.90 -0.5 925,500 - -1.2 925,500 - +0.4 925,821 + +0.4 925,821 + -0.0 925,821 + -1.0 925,822 - +0.5 926,282 - -0.0 926,292 - -0.1 926,318 - +0.4 926,318 - +0.3 926,347 + +0.1 926,347 + -1.3 926,348 - +0.4 926,348 - -0.1 926,555 + GFF2220 0.36 -0.1 926,556 - GFF2220 0.37 -0.2 926,556 - GFF2220 0.37 +0.3 926,812 - GFF2220 0.79 -1.6 926,812 - GFF2220 0.79 -0.1 927,296 + GFF2221 0.37 +0.0 927,297 - GFF2221 0.37 -0.4 927,374 + GFF2221 0.49 +0.5 927,374 + GFF2221 0.49 +0.0 927,375 - GFF2221 0.49 +0.1 927,650 + -0.8 927,651 - -0.2 927,685 + -0.0 927,685 + +1.0 927,685 + -0.3 927,686 - +0.0 927,835 + +0.5
Or see this region's nucleotide sequence