Strain Fitness in Xanthobacter sp. DMC5 around GFF2204

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2202 and GFF2203 are separated by 192 nucleotidesGFF2203 and GFF2204 are separated by 56 nucleotidesGFF2204 and GFF2205 are separated by 149 nucleotidesGFF2205 and GFF2206 are separated by 56 nucleotides GFF2202 - hypothetical protein, at 903,779 to 905,614 GFF2202 GFF2203 - hypothetical protein, at 905,807 to 906,220 GFF2203 GFF2204 - hypothetical protein, at 906,277 to 907,821 GFF2204 GFF2205 - IS1182 family transposase ISMno9, at 907,971 to 908,636 GFF2205 GFF2206 - Dihydroxyacetone kinase, at 908,693 to 910,330 GFF2206 Position (kb) 906 907 908Strain fitness (log2 ratio) -2 -1 0 1at 905.612 kb on + strandat 905.613 kb on - strandat 905.662 kb on + strandat 905.662 kb on + strandat 905.662 kb on + strandat 905.662 kb on + strandat 905.663 kb on - strandat 905.663 kb on - strandat 905.665 kb on + strandat 905.666 kb on - strandat 905.666 kb on - strandat 905.691 kb on - strandat 905.837 kb on + strandat 905.837 kb on + strandat 905.837 kb on + strandat 905.838 kb on - strandat 905.838 kb on - strandat 905.990 kb on + strand, within GFF2203at 905.990 kb on + strand, within GFF2203at 906.214 kb on + strandat 906.215 kb on - strandat 906.218 kb on + strandat 906.218 kb on + strandat 906.218 kb on + strandat 906.219 kb on - strandat 906.290 kb on + strandat 906.290 kb on + strandat 906.291 kb on - strandat 906.291 kb on - strandat 906.291 kb on - strandat 906.291 kb on - strandat 906.291 kb on - strandat 906.476 kb on + strand, within GFF2204at 906.477 kb on - strand, within GFF2204at 906.477 kb on - strand, within GFF2204at 906.560 kb on + strand, within GFF2204at 906.560 kb on + strand, within GFF2204at 906.561 kb on - strand, within GFF2204at 906.561 kb on - strand, within GFF2204at 906.561 kb on - strand, within GFF2204at 906.604 kb on + strand, within GFF2204at 906.604 kb on + strand, within GFF2204at 906.604 kb on + strand, within GFF2204at 906.605 kb on - strand, within GFF2204at 906.605 kb on - strand, within GFF2204at 906.641 kb on + strand, within GFF2204at 906.722 kb on + strand, within GFF2204at 906.723 kb on - strand, within GFF2204at 906.723 kb on - strand, within GFF2204at 906.723 kb on - strand, within GFF2204at 906.799 kb on + strand, within GFF2204at 906.824 kb on + strand, within GFF2204at 906.838 kb on + strand, within GFF2204at 906.924 kb on + strand, within GFF2204at 906.924 kb on + strand, within GFF2204at 906.956 kb on + strand, within GFF2204at 906.957 kb on - strand, within GFF2204at 906.957 kb on - strand, within GFF2204at 906.967 kb on - strand, within GFF2204at 907.366 kb on + strand, within GFF2204at 907.366 kb on + strand, within GFF2204at 907.367 kb on - strand, within GFF2204at 907.367 kb on - strand, within GFF2204at 907.367 kb on - strand, within GFF2204at 907.532 kb on + strand, within GFF2204at 907.532 kb on + strand, within GFF2204at 907.532 kb on + strand, within GFF2204at 907.532 kb on + strand, within GFF2204at 907.533 kb on - strand, within GFF2204at 907.533 kb on - strand, within GFF2204at 907.535 kb on + strand, within GFF2204at 907.536 kb on - strand, within GFF2204at 907.541 kb on - strand, within GFF2204at 907.588 kb on + strand, within GFF2204at 907.627 kb on + strand, within GFF2204at 907.627 kb on + strand, within GFF2204at 907.627 kb on + strand, within GFF2204at 907.628 kb on - strand, within GFF2204at 907.666 kb on + strand, within GFF2204at 907.667 kb on - strandat 907.667 kb on - strandat 907.667 kb on - strandat 907.726 kb on + strandat 907.726 kb on + strandat 907.727 kb on - strandat 907.727 kb on - strandat 907.782 kb on + strandat 907.782 kb on + strandat 907.782 kb on + strandat 907.783 kb on - strandat 907.783 kb on - strandat 907.783 kb on - strandat 907.793 kb on + strandat 907.793 kb on + strandat 907.794 kb on - strandat 907.794 kb on - strandat 908.005 kb on + strandat 908.005 kb on + strandat 908.005 kb on + strandat 908.005 kb on + strandat 908.005 kb on + strandat 908.006 kb on - strandat 908.006 kb on - strandat 908.017 kb on + strandat 908.062 kb on + strand, within GFF2205at 908.102 kb on + strand, within GFF2205at 908.102 kb on + strand, within GFF2205at 908.102 kb on + strand, within GFF2205at 908.102 kb on + strand, within GFF2205at 908.102 kb on + strand, within GFF2205at 908.103 kb on - strand, within GFF2205at 908.103 kb on - strand, within GFF2205at 908.103 kb on - strand, within GFF2205at 908.103 kb on - strand, within GFF2205at 908.113 kb on - strand, within GFF2205at 908.176 kb on - strand, within GFF2205at 908.236 kb on - strand, within GFF2205at 908.436 kb on + strand, within GFF2205at 908.511 kb on + strand, within GFF2205at 908.512 kb on - strand, within GFF2205at 908.678 kb on + strandat 908.782 kb on - strandat 908.782 kb on - strandat 908.782 kb on - strandat 908.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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905,612 + +1.4
905,613 - -0.2
905,662 + +0.3
905,662 + +0.4
905,662 + +0.2
905,662 + -0.0
905,663 - -0.8
905,663 - -0.5
905,665 + -0.1
905,666 - +0.1
905,666 - +0.3
905,691 - +0.5
905,837 + +1.0
905,837 + +0.2
905,837 + -1.0
905,838 - +0.6
905,838 - -0.1
905,990 + GFF2203 0.44 +0.3
905,990 + GFF2203 0.44 -1.0
906,214 + -0.4
906,215 - -1.4
906,218 + -0.1
906,218 + +0.2
906,218 + +0.6
906,219 - +0.4
906,290 + +0.3
906,290 + +0.7
906,291 - -0.4
906,291 - -0.5
906,291 - -0.3
906,291 - -0.1
906,291 - +0.3
906,476 + GFF2204 0.13 -0.2
906,477 - GFF2204 0.13 -0.9
906,477 - GFF2204 0.13 -1.4
906,560 + GFF2204 0.18 +1.2
906,560 + GFF2204 0.18 -0.1
906,561 - GFF2204 0.18 -0.6
906,561 - GFF2204 0.18 -0.5
906,561 - GFF2204 0.18 +0.1
906,604 + GFF2204 0.21 +0.4
906,604 + GFF2204 0.21 -0.4
906,604 + GFF2204 0.21 -2.2
906,605 - GFF2204 0.21 -0.9
906,605 - GFF2204 0.21 +0.1
906,641 + GFF2204 0.24 +0.4
906,722 + GFF2204 0.29 +1.0
906,723 - GFF2204 0.29 -0.0
906,723 - GFF2204 0.29 -1.1
906,723 - GFF2204 0.29 -0.0
906,799 + GFF2204 0.34 -0.2
906,824 + GFF2204 0.35 +0.2
906,838 + GFF2204 0.36 -0.2
906,924 + GFF2204 0.42 +0.0
906,924 + GFF2204 0.42 +0.7
906,956 + GFF2204 0.44 +0.6
906,957 - GFF2204 0.44 -1.3
906,957 - GFF2204 0.44 +1.2
906,967 - GFF2204 0.45 -0.8
907,366 + GFF2204 0.70 -1.2
907,366 + GFF2204 0.70 +0.3
907,367 - GFF2204 0.71 +0.3
907,367 - GFF2204 0.71 +0.4
907,367 - GFF2204 0.71 +1.1
907,532 + GFF2204 0.81 +0.1
907,532 + GFF2204 0.81 -0.1
907,532 + GFF2204 0.81 +1.0
907,532 + GFF2204 0.81 +0.3
907,533 - GFF2204 0.81 -0.7
907,533 - GFF2204 0.81 -0.7
907,535 + GFF2204 0.81 +0.0
907,536 - GFF2204 0.81 -0.4
907,541 - GFF2204 0.82 -0.1
907,588 + GFF2204 0.85 -0.1
907,627 + GFF2204 0.87 -1.0
907,627 + GFF2204 0.87 +0.0
907,627 + GFF2204 0.87 -0.5
907,628 - GFF2204 0.87 +0.6
907,666 + GFF2204 0.90 -0.3
907,667 - +0.8
907,667 - +0.2
907,667 - +0.8
907,726 + -0.1
907,726 + +0.4
907,727 - +0.3
907,727 - +0.4
907,782 + -0.9
907,782 + -0.3
907,782 + -0.5
907,783 - -0.1
907,783 - -0.2
907,783 - -0.1
907,793 + -0.3
907,793 + -0.0
907,794 - -0.2
907,794 - -0.1
908,005 + -1.1
908,005 + +1.0
908,005 + +0.3
908,005 + +0.2
908,005 + +0.6
908,006 - +0.8
908,006 - +0.5
908,017 + +0.3
908,062 + GFF2205 0.14 -1.4
908,102 + GFF2205 0.20 +0.0
908,102 + GFF2205 0.20 -1.5
908,102 + GFF2205 0.20 -0.0
908,102 + GFF2205 0.20 -0.5
908,102 + GFF2205 0.20 -0.4
908,103 - GFF2205 0.20 +0.3
908,103 - GFF2205 0.20 +0.2
908,103 - GFF2205 0.20 -0.1
908,103 - GFF2205 0.20 +0.3
908,113 - GFF2205 0.21 +0.2
908,176 - GFF2205 0.31 -1.8
908,236 - GFF2205 0.40 -0.5
908,436 + GFF2205 0.70 -0.5
908,511 + GFF2205 0.81 +0.5
908,512 - GFF2205 0.81 -0.5
908,678 + +0.2
908,782 - +0.3
908,782 - +0.5
908,782 - -0.1
908,782 - +0.4

Or see this region's nucleotide sequence