Strain Fitness in Xanthobacter sp. DMC5 around GFF2200

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2199 and GFF2200 are separated by 9 nucleotidesGFF2200 and GFF2201 are separated by 2 nucleotides GFF2199 - hypothetical protein, at 897,950 to 899,080 GFF2199 GFF2200 - hypothetical protein, at 899,090 to 902,104 GFF2200 GFF2201 - hypothetical protein, at 902,107 to 902,847 GFF2201 Position (kb) 899 900 901 902 903Strain fitness (log2 ratio) -2 -1 0 1at 898.125 kb on - strand, within GFF2199at 898.138 kb on + strand, within GFF2199at 898.139 kb on - strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.189 kb on + strand, within GFF2199at 898.190 kb on - strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.199 kb on + strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.200 kb on - strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.254 kb on + strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.255 kb on - strand, within GFF2199at 898.262 kb on + strand, within GFF2199at 898.308 kb on + strand, within GFF2199at 898.309 kb on - strand, within GFF2199at 898.322 kb on + strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.323 kb on - strand, within GFF2199at 898.574 kb on - strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.594 kb on + strand, within GFF2199at 898.596 kb on + strand, within GFF2199at 898.625 kb on + strand, within GFF2199at 898.626 kb on - strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.692 kb on + strand, within GFF2199at 898.808 kb on + strand, within GFF2199at 898.809 kb on - strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.926 kb on + strand, within GFF2199at 898.927 kb on - strand, within GFF2199at 898.927 kb on - strand, within GFF2199at 898.932 kb on + strand, within GFF2199at 898.994 kb on + strandat 898.995 kb on - strandat 898.995 kb on - strandat 898.995 kb on - strandat 899.078 kb on + strandat 899.156 kb on + strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.157 kb on - strandat 899.286 kb on - strandat 899.345 kb on + strandat 899.346 kb on - strandat 899.579 kb on + strand, within GFF2200at 899.579 kb on + strand, within GFF2200at 899.580 kb on - strand, within GFF2200at 899.580 kb on - strand, within GFF2200at 899.652 kb on - strand, within GFF2200at 899.652 kb on - strand, within GFF2200at 899.678 kb on + strand, within GFF2200at 899.678 kb on + strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.679 kb on - strand, within GFF2200at 899.681 kb on + strand, within GFF2200at 899.795 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 899.846 kb on + strand, within GFF2200at 900.018 kb on - strand, within GFF2200at 900.353 kb on + strand, within GFF2200at 900.353 kb on + strand, within GFF2200at 900.354 kb on - strand, within GFF2200at 900.354 kb on - strand, within GFF2200at 900.354 kb on - strand, within GFF2200at 900.354 kb on - strand, within GFF2200at 900.383 kb on + strand, within GFF2200at 900.383 kb on + strand, within GFF2200at 900.383 kb on + strand, within GFF2200at 900.383 kb on + strand, within GFF2200at 900.383 kb on + strand, within GFF2200at 900.384 kb on - strand, within GFF2200at 900.384 kb on - strand, within GFF2200at 900.384 kb on - strand, within GFF2200at 900.384 kb on - strand, within GFF2200at 900.384 kb on - strand, within GFF2200at 900.395 kb on + strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.396 kb on - strand, within GFF2200at 900.440 kb on + strand, within GFF2200at 900.440 kb on + strand, within GFF2200at 900.440 kb on + strand, within GFF2200at 900.441 kb on - strand, within GFF2200at 900.441 kb on - strand, within GFF2200at 900.441 kb on - strand, within GFF2200at 900.443 kb on + strand, within GFF2200at 900.443 kb on + strand, within GFF2200at 900.444 kb on - strand, within GFF2200at 900.609 kb on - strand, within GFF2200at 900.635 kb on + strand, within GFF2200at 900.635 kb on + strand, within GFF2200at 900.635 kb on + strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.636 kb on - strand, within GFF2200at 900.698 kb on + strand, within GFF2200at 900.698 kb on + strand, within GFF2200at 900.698 kb on + strand, within GFF2200at 900.699 kb on - strand, within GFF2200at 900.800 kb on + strand, within GFF2200at 900.801 kb on - strand, within GFF2200at 900.801 kb on - strand, within GFF2200at 900.801 kb on - strand, within GFF2200at 900.801 kb on - strand, within GFF2200at 900.803 kb on + strand, within GFF2200at 900.823 kb on + strand, within GFF2200at 900.824 kb on - strand, within GFF2200at 900.824 kb on - strand, within GFF2200at 900.878 kb on + strand, within GFF2200at 900.878 kb on + strand, within GFF2200at 900.878 kb on + strand, within GFF2200at 900.878 kb on + strand, within GFF2200at 900.879 kb on - strand, within GFF2200at 900.879 kb on - strand, within GFF2200at 901.004 kb on + strand, within GFF2200at 901.004 kb on + strand, within GFF2200at 901.004 kb on + strand, within GFF2200at 901.005 kb on - strand, within GFF2200at 901.005 kb on - strand, within GFF2200at 901.005 kb on - strand, within GFF2200at 901.005 kb on - strand, within GFF2200at 901.005 kb on - strand, within GFF2200at 901.021 kb on + strand, within GFF2200at 901.021 kb on + strand, within GFF2200at 901.021 kb on + strand, within GFF2200at 901.022 kb on - strand, within GFF2200at 901.022 kb on - strand, within GFF2200at 901.022 kb on - strand, within GFF2200at 901.022 kb on - strand, within GFF2200at 901.022 kb on - strand, within GFF2200at 901.103 kb on + strand, within GFF2200at 901.103 kb on + strand, within GFF2200at 901.103 kb on + strand, within GFF2200at 901.103 kb on + strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.104 kb on - strand, within GFF2200at 901.105 kb on + strand, within GFF2200at 901.105 kb on + strand, within GFF2200at 901.106 kb on - strand, within GFF2200at 901.106 kb on - strand, within GFF2200at 901.146 kb on - strand, within GFF2200at 901.146 kb on - strand, within GFF2200at 901.491 kb on - strand, within GFF2200at 901.491 kb on - strand, within GFF2200at 901.491 kb on - strand, within GFF2200at 901.500 kb on - strand, within GFF2200at 901.660 kb on - strand, within GFF2200at 901.704 kb on - strand, within GFF2200at 901.744 kb on + strand, within GFF2200at 901.744 kb on + strand, within GFF2200at 901.744 kb on + strand, within GFF2200at 901.744 kb on + strand, within GFF2200at 901.745 kb on - strand, within GFF2200at 901.745 kb on - strand, within GFF2200at 901.745 kb on - strand, within GFF2200at 901.745 kb on - strand, within GFF2200at 901.762 kb on + strand, within GFF2200at 901.762 kb on + strand, within GFF2200at 901.762 kb on + strand, within GFF2200at 901.762 kb on + strand, within GFF2200at 901.762 kb on + strand, within GFF2200at 901.763 kb on - strand, within GFF2200at 901.763 kb on - strand, within GFF2200at 901.763 kb on - strand, within GFF2200at 901.937 kb on + strandat 902.051 kb on + strandat 902.075 kb on + strandat 902.075 kb on + strandat 902.075 kb on + strandat 902.076 kb on - strandat 902.143 kb on + strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.144 kb on - strandat 902.329 kb on + strand, within GFF2201at 902.689 kb on + strand, within GFF2201at 902.689 kb on + strand, within GFF2201at 902.690 kb on - strand, within GFF2201at 902.763 kb on + strand, within GFF2201at 902.763 kb on + strand, within GFF2201at 902.763 kb on + strand, within GFF2201at 902.763 kb on + strand, within GFF2201at 902.763 kb on + strand, within GFF2201at 902.764 kb on - strand, within GFF2201at 902.764 kb on - strand, within GFF2201at 902.764 kb on - strand, within GFF2201at 902.764 kb on - strand, within GFF2201at 902.765 kb on + strand, within GFF2201at 902.765 kb on + strand, within GFF2201at 902.766 kb on - strand, within GFF2201at 902.859 kb on - strandat 902.860 kb on + strandat 902.860 kb on + strandat 902.860 kb on + strandat 902.861 kb on - strandat 902.861 kb on - strandat 902.861 kb on - strandat 902.861 kb on - strandat 902.861 kb on - strandat 902.979 kb on + strandat 903.001 kb on - strandat 903.001 kb on - strandat 903.001 kb on - strandat 903.044 kb on + strandat 903.083 kb on - strandat 903.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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898,125 - GFF2199 0.15 -1.5
898,138 + GFF2199 0.17 +0.8
898,139 - GFF2199 0.17 -0.3
898,189 + GFF2199 0.21 +0.5
898,189 + GFF2199 0.21 -0.1
898,189 + GFF2199 0.21 +0.1
898,190 - GFF2199 0.21 +0.1
898,199 + GFF2199 0.22 +0.1
898,199 + GFF2199 0.22 +1.0
898,199 + GFF2199 0.22 -0.5
898,199 + GFF2199 0.22 +0.7
898,199 + GFF2199 0.22 +0.4
898,199 + GFF2199 0.22 +0.5
898,200 - GFF2199 0.22 -0.2
898,200 - GFF2199 0.22 -0.3
898,200 - GFF2199 0.22 +0.2
898,200 - GFF2199 0.22 -0.2
898,200 - GFF2199 0.22 -1.2
898,200 - GFF2199 0.22 -0.9
898,200 - GFF2199 0.22 -1.0
898,254 + GFF2199 0.27 -0.1
898,254 + GFF2199 0.27 -0.5
898,254 + GFF2199 0.27 -0.1
898,255 - GFF2199 0.27 -0.1
898,255 - GFF2199 0.27 +0.5
898,255 - GFF2199 0.27 -0.2
898,255 - GFF2199 0.27 +0.6
898,262 + GFF2199 0.28 +0.6
898,308 + GFF2199 0.32 +0.7
898,309 - GFF2199 0.32 +0.4
898,322 + GFF2199 0.33 -0.6
898,323 - GFF2199 0.33 -0.0
898,323 - GFF2199 0.33 +0.8
898,574 - GFF2199 0.55 -0.2
898,594 + GFF2199 0.57 +0.4
898,594 + GFF2199 0.57 -1.5
898,596 + GFF2199 0.57 -0.9
898,625 + GFF2199 0.60 -1.5
898,626 - GFF2199 0.60 -0.6
898,692 + GFF2199 0.66 +0.0
898,692 + GFF2199 0.66 -0.4
898,808 + GFF2199 0.76 +0.2
898,809 - GFF2199 0.76 -1.4
898,926 + GFF2199 0.86 -0.2
898,926 + GFF2199 0.86 +0.6
898,926 + GFF2199 0.86 -0.5
898,926 + GFF2199 0.86 +0.4
898,927 - GFF2199 0.86 +0.1
898,927 - GFF2199 0.86 +0.1
898,932 + GFF2199 0.87 +0.5
898,994 + -0.4
898,995 - -0.4
898,995 - -0.5
898,995 - -0.4
899,078 + +0.4
899,156 + -0.2
899,157 - +0.7
899,157 - -0.6
899,157 - +0.0
899,157 - -0.4
899,286 - -0.2
899,345 + +1.1
899,346 - -0.8
899,579 + GFF2200 0.16 -0.3
899,579 + GFF2200 0.16 +1.2
899,580 - GFF2200 0.16 +0.5
899,580 - GFF2200 0.16 -0.4
899,652 - GFF2200 0.19 -0.3
899,652 - GFF2200 0.19 +0.0
899,678 + GFF2200 0.20 +0.3
899,678 + GFF2200 0.20 +0.5
899,679 - GFF2200 0.20 +1.6
899,679 - GFF2200 0.20 -0.1
899,679 - GFF2200 0.20 -0.9
899,681 + GFF2200 0.20 +0.6
899,795 + GFF2200 0.23 +0.3
899,846 + GFF2200 0.25 -1.0
899,846 + GFF2200 0.25 +0.3
899,846 + GFF2200 0.25 +0.1
900,018 - GFF2200 0.31 -0.5
900,353 + GFF2200 0.42 -0.3
900,353 + GFF2200 0.42 +0.9
900,354 - GFF2200 0.42 +0.1
900,354 - GFF2200 0.42 +0.3
900,354 - GFF2200 0.42 +0.4
900,354 - GFF2200 0.42 -2.0
900,383 + GFF2200 0.43 +1.4
900,383 + GFF2200 0.43 +0.2
900,383 + GFF2200 0.43 -0.1
900,383 + GFF2200 0.43 +0.5
900,383 + GFF2200 0.43 +0.3
900,384 - GFF2200 0.43 +0.6
900,384 - GFF2200 0.43 +0.4
900,384 - GFF2200 0.43 +0.5
900,384 - GFF2200 0.43 -0.4
900,384 - GFF2200 0.43 -0.5
900,395 + GFF2200 0.43 -1.1
900,396 - GFF2200 0.43 -0.4
900,396 - GFF2200 0.43 -1.6
900,396 - GFF2200 0.43 -1.7
900,396 - GFF2200 0.43 -0.7
900,396 - GFF2200 0.43 +0.5
900,396 - GFF2200 0.43 +0.0
900,440 + GFF2200 0.45 -0.2
900,440 + GFF2200 0.45 -0.3
900,440 + GFF2200 0.45 +0.0
900,441 - GFF2200 0.45 -0.9
900,441 - GFF2200 0.45 +0.0
900,441 - GFF2200 0.45 -0.1
900,443 + GFF2200 0.45 -0.0
900,443 + GFF2200 0.45 -0.6
900,444 - GFF2200 0.45 +0.2
900,609 - GFF2200 0.50 -0.1
900,635 + GFF2200 0.51 +0.8
900,635 + GFF2200 0.51 -0.3
900,635 + GFF2200 0.51 +0.2
900,636 - GFF2200 0.51 +1.4
900,636 - GFF2200 0.51 -0.5
900,636 - GFF2200 0.51 +0.0
900,636 - GFF2200 0.51 +0.1
900,636 - GFF2200 0.51 -1.8
900,636 - GFF2200 0.51 +0.5
900,636 - GFF2200 0.51 +0.6
900,636 - GFF2200 0.51 -1.4
900,636 - GFF2200 0.51 -1.2
900,636 - GFF2200 0.51 -0.3
900,698 + GFF2200 0.53 -0.1
900,698 + GFF2200 0.53 +0.4
900,698 + GFF2200 0.53 +0.7
900,699 - GFF2200 0.53 -0.7
900,800 + GFF2200 0.57 +0.8
900,801 - GFF2200 0.57 +0.6
900,801 - GFF2200 0.57 -0.8
900,801 - GFF2200 0.57 +0.9
900,801 - GFF2200 0.57 -0.1
900,803 + GFF2200 0.57 +0.3
900,823 + GFF2200 0.57 -0.2
900,824 - GFF2200 0.58 -0.6
900,824 - GFF2200 0.58 -2.0
900,878 + GFF2200 0.59 +0.3
900,878 + GFF2200 0.59 -0.5
900,878 + GFF2200 0.59 -1.2
900,878 + GFF2200 0.59 -1.5
900,879 - GFF2200 0.59 +0.5
900,879 - GFF2200 0.59 +0.8
901,004 + GFF2200 0.63 -0.6
901,004 + GFF2200 0.63 -0.3
901,004 + GFF2200 0.63 -0.9
901,005 - GFF2200 0.64 +0.5
901,005 - GFF2200 0.64 -0.3
901,005 - GFF2200 0.64 -0.2
901,005 - GFF2200 0.64 +0.0
901,005 - GFF2200 0.64 +0.3
901,021 + GFF2200 0.64 -0.7
901,021 + GFF2200 0.64 -0.5
901,021 + GFF2200 0.64 -0.5
901,022 - GFF2200 0.64 -0.7
901,022 - GFF2200 0.64 -1.1
901,022 - GFF2200 0.64 -0.3
901,022 - GFF2200 0.64 +0.3
901,022 - GFF2200 0.64 -0.3
901,103 + GFF2200 0.67 -1.2
901,103 + GFF2200 0.67 -0.0
901,103 + GFF2200 0.67 +1.0
901,103 + GFF2200 0.67 +0.2
901,104 - GFF2200 0.67 -0.5
901,104 - GFF2200 0.67 +0.6
901,104 - GFF2200 0.67 +0.7
901,104 - GFF2200 0.67 -0.1
901,104 - GFF2200 0.67 +0.6
901,104 - GFF2200 0.67 +0.0
901,104 - GFF2200 0.67 +0.2
901,105 + GFF2200 0.67 -1.0
901,105 + GFF2200 0.67 -0.7
901,106 - GFF2200 0.67 -0.7
901,106 - GFF2200 0.67 -0.1
901,146 - GFF2200 0.68 -0.8
901,146 - GFF2200 0.68 +1.0
901,491 - GFF2200 0.80 +0.1
901,491 - GFF2200 0.80 -0.1
901,491 - GFF2200 0.80 -0.2
901,500 - GFF2200 0.80 -1.0
901,660 - GFF2200 0.85 -0.1
901,704 - GFF2200 0.87 -0.4
901,744 + GFF2200 0.88 -0.6
901,744 + GFF2200 0.88 +0.7
901,744 + GFF2200 0.88 +0.2
901,744 + GFF2200 0.88 +0.0
901,745 - GFF2200 0.88 +0.0
901,745 - GFF2200 0.88 -1.0
901,745 - GFF2200 0.88 +0.6
901,745 - GFF2200 0.88 -0.4
901,762 + GFF2200 0.89 +0.9
901,762 + GFF2200 0.89 +0.3
901,762 + GFF2200 0.89 -0.4
901,762 + GFF2200 0.89 -0.5
901,762 + GFF2200 0.89 +0.0
901,763 - GFF2200 0.89 -0.1
901,763 - GFF2200 0.89 +0.2
901,763 - GFF2200 0.89 -0.4
901,937 + +0.7
902,051 + -2.0
902,075 + -0.5
902,075 + +0.5
902,075 + -1.6
902,076 - +0.3
902,143 + -0.6
902,144 - -0.2
902,144 - -0.2
902,144 - -0.8
902,329 + GFF2201 0.30 -1.3
902,689 + GFF2201 0.79 -0.1
902,689 + GFF2201 0.79 -1.7
902,690 - GFF2201 0.79 -0.1
902,763 + GFF2201 0.89 -0.1
902,763 + GFF2201 0.89 +0.3
902,763 + GFF2201 0.89 +1.6
902,763 + GFF2201 0.89 -1.5
902,763 + GFF2201 0.89 -0.4
902,764 - GFF2201 0.89 -0.1
902,764 - GFF2201 0.89 -0.6
902,764 - GFF2201 0.89 +0.8
902,764 - GFF2201 0.89 -1.5
902,765 + GFF2201 0.89 -0.7
902,765 + GFF2201 0.89 +0.2
902,766 - GFF2201 0.89 +0.3
902,859 - -0.0
902,860 + -1.4
902,860 + -1.5
902,860 + +0.1
902,861 - -0.5
902,861 - -2.1
902,861 - -0.1
902,861 - -0.7
902,861 - +0.8
902,979 + +0.6
903,001 - +0.6
903,001 - -0.1
903,001 - +0.5
903,044 + +1.6
903,083 - +0.8
903,086 - +0.6

Or see this region's nucleotide sequence