Strain Fitness in Xanthobacter sp. DMC5 around GFF2178

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2176 and GFF2177 overlap by 4 nucleotidesGFF2177 and GFF2178 are separated by 134 nucleotidesGFF2178 and GFF2179 are separated by 105 nucleotides GFF2176 - L-lactate dehydrogenase, at 875,451 to 876,626 GFF2176 GFF2177 - Putative L-lactate dehydrogenase operon regulatory protein, at 876,623 to 877,381 GFF2177 GFF2178 - hypothetical protein, at 877,516 to 878,439 GFF2178 GFF2179 - Phthiocerol synthesis polyketide synthase type I PpsC, at 878,545 to 879,531 GFF2179 Position (kb) 877 878 879Strain fitness (log2 ratio) -2 -1 0 1at 876.539 kb on - strandat 876.539 kb on - strandat 876.539 kb on - strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.556 kb on + strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.557 kb on - strandat 876.602 kb on - strandat 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.843 kb on + strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.844 kb on - strand, within GFF2177at 876.922 kb on + strand, within GFF2177at 876.923 kb on - strand, within GFF2177at 877.119 kb on + strand, within GFF2177at 877.120 kb on - strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.197 kb on + strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.198 kb on - strand, within GFF2177at 877.408 kb on + strandat 877.432 kb on - strandat 877.543 kb on - strandat 877.661 kb on + strand, within GFF2178at 877.661 kb on + strand, within GFF2178at 877.661 kb on + strand, within GFF2178at 877.700 kb on + strand, within GFF2178at 877.700 kb on + strand, within GFF2178at 877.701 kb on - strand, within GFF2178at 877.701 kb on - strand, within GFF2178at 877.875 kb on + strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.876 kb on - strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.877 kb on + strand, within GFF2178at 877.878 kb on - strand, within GFF2178at 877.878 kb on - strand, within GFF2178at 878.144 kb on + strand, within GFF2178at 878.144 kb on + strand, within GFF2178at 878.325 kb on - strand, within GFF2178at 878.348 kb on + strandat 878.348 kb on + strandat 878.349 kb on - strandat 878.349 kb on - strandat 878.413 kb on + strandat 878.414 kb on - strandat 878.477 kb on - strandat 878.477 kb on - strandat 878.630 kb on + strandat 878.630 kb on + strandat 878.874 kb on - strand, within GFF2179at 878.961 kb on - strand, within GFF2179at 878.961 kb on - strand, within GFF2179at 879.108 kb on + strand, within GFF2179at 879.109 kb on - strand, within GFF2179at 879.109 kb on - strand, within GFF2179at 879.109 kb on - strand, within GFF2179at 879.109 kb on - strand, within GFF2179at 879.109 kb on - strand, within GFF2179at 879.239 kb on + strand, within GFF2179at 879.240 kb on - strand, within GFF2179at 879.248 kb on + strand, within GFF2179at 879.249 kb on - strand, within GFF2179at 879.249 kb on - strand, within GFF2179at 879.365 kb on + strand, within GFF2179at 879.381 kb on - strand, within GFF2179at 879.383 kb on + strand, within GFF2179at 879.383 kb on + strand, within GFF2179at 879.383 kb on + strand, within GFF2179at 879.384 kb on - strand, within GFF2179

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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876,539 - +0.0
876,539 - -0.7
876,539 - -0.7
876,556 + -0.4
876,556 + -0.1
876,556 + +0.9
876,556 + -0.9
876,557 - +0.1
876,557 - +0.5
876,557 - -0.6
876,602 - +0.5
876,843 + GFF2177 0.29 -0.4
876,843 + GFF2177 0.29 -0.3
876,843 + GFF2177 0.29 +0.2
876,843 + GFF2177 0.29 -0.2
876,843 + GFF2177 0.29 -0.9
876,844 - GFF2177 0.29 -2.4
876,844 - GFF2177 0.29 +0.5
876,844 - GFF2177 0.29 -0.6
876,922 + GFF2177 0.39 +0.8
876,923 - GFF2177 0.40 -1.8
877,119 + GFF2177 0.65 +0.3
877,120 - GFF2177 0.65 -0.8
877,197 + GFF2177 0.76 +0.9
877,197 + GFF2177 0.76 +0.4
877,197 + GFF2177 0.76 -0.5
877,197 + GFF2177 0.76 -1.5
877,197 + GFF2177 0.76 -0.4
877,197 + GFF2177 0.76 +0.3
877,197 + GFF2177 0.76 -0.4
877,197 + GFF2177 0.76 +0.2
877,198 - GFF2177 0.76 +1.1
877,198 - GFF2177 0.76 -1.0
877,198 - GFF2177 0.76 +0.1
877,198 - GFF2177 0.76 +0.0
877,408 + +0.6
877,432 - +0.4
877,543 - +0.3
877,661 + GFF2178 0.16 +0.3
877,661 + GFF2178 0.16 -0.2
877,661 + GFF2178 0.16 +0.8
877,700 + GFF2178 0.20 -1.3
877,700 + GFF2178 0.20 +1.0
877,701 - GFF2178 0.20 +0.6
877,701 - GFF2178 0.20 -0.4
877,875 + GFF2178 0.39 +0.6
877,876 - GFF2178 0.39 -1.8
877,876 - GFF2178 0.39 -0.3
877,876 - GFF2178 0.39 -0.8
877,877 + GFF2178 0.39 +0.3
877,877 + GFF2178 0.39 +1.2
877,877 + GFF2178 0.39 -0.0
877,877 + GFF2178 0.39 -0.7
877,877 + GFF2178 0.39 -1.4
877,877 + GFF2178 0.39 +1.0
877,878 - GFF2178 0.39 -1.3
877,878 - GFF2178 0.39 -0.4
878,144 + GFF2178 0.68 -0.5
878,144 + GFF2178 0.68 -1.5
878,325 - GFF2178 0.88 -0.3
878,348 + -0.8
878,348 + -0.4
878,349 - -0.3
878,349 - -0.1
878,413 + -0.7
878,414 - -0.2
878,477 - +1.3
878,477 - +0.2
878,630 + +0.2
878,630 + +0.1
878,874 - GFF2179 0.33 -0.2
878,961 - GFF2179 0.42 -0.2
878,961 - GFF2179 0.42 +0.4
879,108 + GFF2179 0.57 -0.8
879,109 - GFF2179 0.57 -0.7
879,109 - GFF2179 0.57 -0.7
879,109 - GFF2179 0.57 +0.0
879,109 - GFF2179 0.57 +0.3
879,109 - GFF2179 0.57 -0.2
879,239 + GFF2179 0.70 -0.6
879,240 - GFF2179 0.70 +0.9
879,248 + GFF2179 0.71 +0.6
879,249 - GFF2179 0.71 -0.8
879,249 - GFF2179 0.71 -0.5
879,365 + GFF2179 0.83 +0.2
879,381 - GFF2179 0.85 -1.0
879,383 + GFF2179 0.85 +0.0
879,383 + GFF2179 0.85 +0.0
879,383 + GFF2179 0.85 -0.2
879,384 - GFF2179 0.85 +0.7

Or see this region's nucleotide sequence