Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2167 and GFF2168 are separated by 77 nucleotides GFF2168 and GFF2169 are separated by 30 nucleotides GFF2169 and GFF2170 are separated by 95 nucleotides
GFF2167 - Catecholate siderophore receptor Fiu, at 863,875 to 866,220
GFF2167
GFF2168 - PKHD-type hydroxylase, at 866,298 to 866,981
GFF2168
GFF2169 - hypothetical protein, at 867,012 to 867,455
GFF2169
GFF2170 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 867,551 to 869,764
GFF2170
Position (kb) 867
868 Strain fitness (log2 ratio) -2
-1
0
1 at 866.018 kb on - strand at 866.018 kb on - strand at 866.083 kb on + strand at 866.098 kb on + strand at 866.219 kb on - strand at 866.219 kb on - strand at 866.219 kb on - strand at 866.219 kb on - strand at 866.240 kb on + strand at 866.241 kb on - strand at 866.423 kb on + strand, within GFF2168 at 866.476 kb on + strand, within GFF2168 at 866.476 kb on + strand, within GFF2168 at 866.476 kb on + strand, within GFF2168 at 866.477 kb on - strand, within GFF2168 at 866.477 kb on - strand, within GFF2168 at 866.557 kb on - strand, within GFF2168 at 866.563 kb on + strand, within GFF2168 at 866.563 kb on + strand, within GFF2168 at 866.563 kb on + strand, within GFF2168 at 866.564 kb on - strand, within GFF2168 at 866.676 kb on + strand, within GFF2168 at 866.754 kb on + strand, within GFF2168 at 866.755 kb on - strand, within GFF2168 at 866.865 kb on + strand, within GFF2168 at 866.865 kb on + strand, within GFF2168 at 866.866 kb on - strand, within GFF2168 at 866.866 kb on - strand, within GFF2168 at 866.946 kb on + strand at 866.946 kb on + strand at 866.946 kb on + strand at 866.947 kb on - strand at 866.947 kb on - strand at 867.013 kb on + strand at 867.013 kb on + strand at 867.014 kb on - strand at 867.014 kb on - strand at 867.076 kb on + strand, within GFF2169 at 867.076 kb on + strand, within GFF2169 at 867.077 kb on - strand, within GFF2169 at 867.077 kb on - strand, within GFF2169 at 867.107 kb on + strand, within GFF2169 at 867.211 kb on + strand, within GFF2169 at 867.211 kb on + strand, within GFF2169 at 867.211 kb on + strand, within GFF2169 at 867.212 kb on - strand, within GFF2169 at 867.400 kb on + strand, within GFF2169 at 867.401 kb on - strand, within GFF2169 at 867.577 kb on + strand at 867.577 kb on + strand at 867.578 kb on - strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.579 kb on + strand at 867.580 kb on - strand at 867.580 kb on - strand at 867.580 kb on - strand at 867.580 kb on - strand at 867.580 kb on - strand at 867.600 kb on + strand at 867.630 kb on + strand at 867.630 kb on + strand at 867.630 kb on + strand at 867.630 kb on + strand at 867.631 kb on - strand at 867.980 kb on + strand, within GFF2170 at 868.030 kb on - strand, within GFF2170 at 868.032 kb on - strand, within GFF2170 at 868.033 kb on - strand, within GFF2170 at 868.191 kb on + strand, within GFF2170 at 868.192 kb on - strand, within GFF2170 at 868.332 kb on + strand, within GFF2170 at 868.332 kb on + strand, within GFF2170 at 868.332 kb on + strand, within GFF2170 at 868.332 kb on + strand, within GFF2170 at 868.332 kb on + strand, within GFF2170 at 868.333 kb on - strand, within GFF2170 at 868.333 kb on - strand, within GFF2170
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 866,018 - -0.7 866,018 - +0.3 866,083 + +0.4 866,098 + -0.2 866,219 - -2.0 866,219 - -0.4 866,219 - +0.7 866,219 - -1.2 866,240 + -0.9 866,241 - +1.5 866,423 + GFF2168 0.18 +0.8 866,476 + GFF2168 0.26 +0.6 866,476 + GFF2168 0.26 -0.5 866,476 + GFF2168 0.26 +0.2 866,477 - GFF2168 0.26 -1.1 866,477 - GFF2168 0.26 +0.5 866,557 - GFF2168 0.38 +0.8 866,563 + GFF2168 0.39 -0.1 866,563 + GFF2168 0.39 -1.1 866,563 + GFF2168 0.39 -0.9 866,564 - GFF2168 0.39 +0.7 866,676 + GFF2168 0.55 -0.6 866,754 + GFF2168 0.67 +0.0 866,755 - GFF2168 0.67 +0.4 866,865 + GFF2168 0.83 -0.7 866,865 + GFF2168 0.83 -0.5 866,866 - GFF2168 0.83 -0.7 866,866 - GFF2168 0.83 -1.1 866,946 + +0.1 866,946 + +0.6 866,946 + -0.2 866,947 - +0.4 866,947 - -0.6 867,013 + -0.8 867,013 + +0.9 867,014 - -2.0 867,014 - -1.0 867,076 + GFF2169 0.14 +0.8 867,076 + GFF2169 0.14 -0.7 867,077 - GFF2169 0.15 +0.1 867,077 - GFF2169 0.15 -0.6 867,107 + GFF2169 0.21 -1.6 867,211 + GFF2169 0.45 -0.1 867,211 + GFF2169 0.45 -0.5 867,211 + GFF2169 0.45 -0.3 867,212 - GFF2169 0.45 -0.1 867,400 + GFF2169 0.87 -1.1 867,401 - GFF2169 0.88 -0.6 867,577 + -0.1 867,577 + -1.5 867,578 - +0.0 867,579 + +0.4 867,579 + -1.2 867,579 + -1.8 867,579 + -0.4 867,579 + +0.0 867,579 + +0.3 867,579 + +0.0 867,580 - -0.2 867,580 - +0.9 867,580 - -0.0 867,580 - +0.4 867,580 - -0.3 867,600 + -0.0 867,630 + +0.9 867,630 + -0.3 867,630 + +0.0 867,630 + +1.4 867,631 - -0.4 867,980 + GFF2170 0.19 +0.7 868,030 - GFF2170 0.22 +0.0 868,032 - GFF2170 0.22 +0.5 868,033 - GFF2170 0.22 +1.4 868,191 + GFF2170 0.29 -0.3 868,192 - GFF2170 0.29 -0.8 868,332 + GFF2170 0.35 +0.2 868,332 + GFF2170 0.35 -0.8 868,332 + GFF2170 0.35 -1.4 868,332 + GFF2170 0.35 -0.6 868,332 + GFF2170 0.35 +0.8 868,333 - GFF2170 0.35 -1.0 868,333 - GFF2170 0.35 -0.2
Or see this region's nucleotide sequence